ImageJ / FIJI plugin for Optical flow based motion compensation for 2-photon imaging data

ImageJ / FIJI plugin for the compensation and stabilization of multichannel microscopy videos. The publication for this toolbox can be found here and the project website with video results here.

Download

Download the repository via

$ git clone https://github.com/phflot/flow_registration_IJ.git

Dataset

The dataset which we used for our evaluations is available as 2-Photon Movies with Motion Artifacts.

Citation

Details on the method and video results can be found here.

If you use parts of this code or the plugin for your work, please cite

P. Flotho, S. Nomura, B. Kuhn and D. J. Strauss, “Software for Non-Parametric Image Registration of 2-Photon Imaging Data,” J Biophotonics, 2022. doi:https://doi.org/10.1002/jbio.202100330

BibTeX entry

@article{flotea2022a,
    author = {Flotho, P. and Nomura, S. and Kuhn, B. and Strauss, D. J.},
    title = {Software for Non-Parametric Image Registration of 2-Photon Imaging Data},
    year = {2022},
  journal = {J Biophotonics},
  doi = {https://doi.org/10.1002/jbio.202100330}
}