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@ErasmusMC-Bioinformatics

Erasmus Medical Center

Bioinformatics Department

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  1. WeFaceNano WeFaceNano Public

    Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).

    Python 13 1

  2. benchAMRking benchAMRking Public

    SCSS 4 1

  3. galaxytools-emc galaxytools-emc Public

    Tool Shed repositories maintained and developed by the Erasmus University Medical Center, following best practices guidelines set out by the Intergalactic Utilities Commission https://wiki.galaxypr…

    Python 3 1

  4. ARGalaxy-docker ARGalaxy-docker Public

    Docker image that sets up a Galaxy with the Immune Repertoire and SHM pipelines.

    HTML 3

  5. molclass molclass Public

    Moleculair classification tool, search for a variant and get results from many sources

    Python 3 1

  6. EMC-MetaMicrobes EMC-MetaMicrobes Public

    Nextflow pipeline to detect and classify microbial reads in sequencing data from human samples.

    Nextflow 3 2

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