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Description

Add CADD option for turkey.
ENSVAR-6857

Use case

User wants to know CADD scores for a variant in turkey.

Benefits

Addition to CADD annotation feature in VEP endpoints.

Possible Drawbacks

N/A

Testing

Tested in codon with a REST setup.
http://hl-codon-10-02.ebi.ac.uk:3000/vep/meleagris_gallopavo/region/2:29264858/T?content-type=application/json&CADD=1

Changelog

[vep/:species/hgvs/:hgvs_notation]
[vep/:species/id/:id]
[vep/:species/region/:region/:allele]

All of these endpoint will now return CADD result (if available) if used with parameter CADD=snv or CADD=1

@sgiorgetti sgiorgetti requested a review from nakib103 October 22, 2025 06:31
@sgiorgetti
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@likhitha-surapaneni @nakib103 - pls, have this approved on your end.
BTW, VEP tests are failing because of unexpected results for polyphen_prediction; is that expected?
Thanks

@nakib103
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@sgiorgetti , probably will get to it in the next week.
The UT failure we are aware of - we will add in a fix for that.

@sgiorgetti
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@nakib103 @likhitha-surapaneni - kind reminder

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3 participants