Add qqLacDent6 EAR

[tbrown91]

Assembly review request

• ToLID: qqLacDent6
• Species: Lacinius dentiger
• Project: ERGA-BGE
• Affiliation: IZW

[erga-ear-bot]

Hi @tbrown91, thanks for sending the EAR of Lacinius dentiger.
I added the corresponding tag to the PR and will contact a supervisor and a reviewer ASAP.

[erga-ear-bot]

Hi @additive3, do you agree to supervise this assembly?
Please reply to this message only with OK to give acknowledge.

[additive3]

OK

[erga-ear-bot]

*****
EAR Reviewer Selection Process
Date: 2026-03-02 11:14

All Eligible Candidates:

Github ID     | Full Name             | Institution | Total Reviews | Last Review | Active | Working PRs | Calling Score | Adjusted Score
-----------------------------------------------------------------------------------------------------------------------------------------
jesgomez      | Jessica Gomez Garrido | CNAG        | 18            | 2026-02-16  | Y      | 0           | 1036          | 1086          
talioto       | Tyler Alioto          | CNAG        | 10            | 2026-02-20  | Y      | 1           | 1043          | 1073          
additive3     | Jo Wood               | Sanger      | 10            | 2026-02-27  | Y      | 0           | 1028          | 1073          
EmilieTeo     | Emilie Teodori        | Genoscope   | 18            | 2026-02-17  | Y      | 1           | 1043          | 1073          
CaroB-M       | Caroline Menguy       | Genoscope   | 21            | 2026-02-24  | Y      | 1           | 1041          | 1071          
gitcruz       | Fernando Cruz         | CNAG        | 15            | 2026-02-13  | Y      | 1           | 1040          | 1070          
DomAbsolon    | Dom Absolon           | Sanger      | 8             | 2025-11-04  | Y      | 1           | 1030          | 1060          
SarahPelan    | Sarah Pelan           | Sanger      | 8             | 2026-02-18  | Y      | 1           | 1030          | 1060          
tommathers    | Tom Mathers           | Sanger      | 8             | 2026-02-20  | Y      | 1           | 1030          | 1060          
joannacollins | Jo Collins            | Sanger      | 8             | 2026-02-24  | Y      | 1           | 1030          | 1060          
MartinPippel  | Martin Pippel         | SciLifeLab  | 5             | 2026-02-13  | Y      | 1           | 1027          | 1057          
bistace       | Benjamin Istace       | Genoscope   | 15            | 2026-02-20  | Y      | 2           | 1047          | 1057          
msozzoni      | Marcella Sozzoni      | UNIFI       | 3             | 2026-02-19  | Y      | 0           | 1006          | 1056          
gbdias        | Guilherme Dias        | SciLifeLab  | 7             | 2026-02-11  | Y      | 1           | 1025          | 1055          
auryjm        | Jean-Marc Aury        | Genoscope   | 16            | 2026-02-19  | Y      | 2           | 1045          | 1055          

Selected reviewer: Jessica Gomez Garrido (jesgomez)
The decision was based on:
- different institution ('CNAG')
- active ('Y')
- working on 0 PR(s) currently
- highest adjusted calling score in this particular selection (1086)

[erga-ear-bot]

Hi @jesgomez, do you agree to review this assembly?
Please reply to this message only with Yes or No by 06-Mar-2026 at 16:14 CET

[jesgomez]

Yes

[erga-ear-bot]

Thanks for agreeing!
I appointed you as the EAR reviewer.
I will track this as one of your Working PRs until you finish this review.
Please check the Wiki if you need to refresh something. (and remember that you must download the EAR PDF to be able to click on the link to the contact map file!)
Contact the PR assignee for any issues.

[jesgomez]

Hi @tbrown91, thanks for sending this EAR. As for qcEupCave, I don't seem to be able to open the link. Also, can you specify which data types were used?

[additive3]

@tbrown91 as @jesgomez has observed the embedded link for the qqLacDent6 pretext file, isn't a link to file share.

[tbrown91]

Yes sorry both, I had to rush to get something produced and then was away last week. I'll let you know when it's ready

[erga-ear-bot]

Ping @additive3,
One week without any movements on this PR!

[erga-ear-bot]

Ping @additive3,
One week without any movements on this PR!

[additive3]

Hi @tbrown91 @jesgomez

Gentle poke that the review contact map file is not available

[erga-ear-bot]

Ping @additive3,
One week without any movements on this PR!

[tbrown91]

Hi both,

Sorry for the delay here is the link:

https://box.fu-berlin.de/s/Ke65z2XYrNwQsYx

All the best

[erga-ear-bot]

Ping @additive3,
One week without any movements on this PR!

[erga-ear-bot]

Ping @additive3,
One week without any movements on this PR!

[jesgomez]

Sorry @tbrown91 , I tink I missed that you had sent the link. I'll look at this asap!

[jesgomez]

I see... this genome is very repetitive and I can imagine it was really difficult to curate... good job! It's hard for me to distinguish between real repetitive patterns and artificial duplications, but I'm really surprised by the low level of duplicated buscos, very good news! I think I don't have many specific suggestions for the map, but can you add the coverage to the pdf? thanks

[erga-ear-bot]

Ping @additive3,
One week without any movements on this PR!

[erga-ear-bot]

Attention @jesgomez, the EAR PDF was updated.

[tbrown91]

Hey both
I added the coverage stats to the pdf - not sure how much progress we can make on the map itself, but let's see

[jesgomez]

thanks Tom. There's not much I'd change in the map, I see it tricky and don't see anything super clear to improve. Let's see if perhaps @additive3 can give you some tricks or if we can approve it as is.

[tbrown91]

Hey @additive3 I had another look through and really can't see much that I'm comfortable changing. The only remaining sequences that look like they could be integrated are mapping to multiple scaffolds. I'm also not 100% sure of SUPER_13, but wouldn't know what else to do with it

[erga-ear-bot]

Thanks @jesgomez for the review.
I will add a new reviewed species for you to the table when @additive3 merges the PR ;)

Congrats on the assembly @tbrown91!
Please make sure that the fasta file to upload to ENA is generated based on the final reviewed version of the assembly.

After @additive3 confirmation, you can start with the assembly submission to save time.
The PR will be merged only when the final version of the EAR pdf is available.