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java.lang.NullPointerException: Cannot invoke "Object.getClass()" because "<local3>" is null

Status: Open.

#1208 In CompEvol/beast2;

· genesandbones opened on Nov 9, 2025

Running BEAST from command line fails when arguments contain spaces

Status: Open.

#1205 In CompEvol/beast2;

· jugne opened on Sep 9, 2025

Add tree annotator settings to output as comments

Status: Open.

#1204 In CompEvol/beast2;

· SimonGreenhill opened on Aug 15, 2025

Exception in thread "main" java.lang.NullPointerException: Cannot invoke "java.net.URL.openConnection()" because "<local8>" is null

Status: Open.

#1197 In CompEvol/beast2;

· Gipsy-The-Sheller opened on May 31, 2025

Use Function in all inputs of SiteModel

enhancement

Status: Open.

#1196 In CompEvol/beast2;

· walterxie opened on May 22, 2025

BEAUti Tip Date panel does not show Nexus configuration

BEAUti

defect

Status: Open.

#1194 In CompEvol/beast2;

· walterxie opened on May 18, 2025

Restrict the location of clade MRCAs

Status: Open.

#1193 In CompEvol/beast2;

· sbenvari opened on May 15, 2025

generalise Dirichlet Distribution to deal with vectors that do not sum to 1

Status: Open.

#1190 In CompEvol/beast2;

· EvaLiyt opened on May 8, 2025

BactrianIntervalOperator incompatible with integer parameters

Status: Open.

#1183 In CompEvol/beast2;

· sgtRoberty opened on Mar 4, 2025

Beast2 fails with EigenDecompositionCube

Status: Open.

#1182 In CompEvol/beast2;

· aaron-wes opened on Feb 27, 2025

Issues with Treeannotator 2.7.7

Status: Open.

#1178 In CompEvol/beast2;

· lilychughes opened on Feb 4, 2025

Beast 2 home dir problem

Status: Open.

#1175 In CompEvol/beast2;

· hrzolix opened on Dec 19, 2024