Skip to content

Connects to #1287. Snovault conversion #1325

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
mrmin123 wants to merge 82 commits into
base: dev
Choose a base branch
from
Open

Connects to #1287. Snovault conversion #1325

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
82 commits
Select commit Hold shift + click to select a range
eeeb5b5
remove contentbase; update versions and such
mrmin123 Jan 26, 2017
f45f858
rename contentbase namespace to snovault
mrmin123 Jan 26, 2017
39011fb
update database connection
mrmin123 Jan 26, 2017
42e2f2d
fix references to snovault
mrmin123 Jan 26, 2017
0ad0ba9
disable audits; update beautifulsoup version
mrmin123 Jan 26, 2017
685c894
remove es_index_listener; revise setup
mrmin123 Jan 26, 2017
b094801
transfer dev_servers from clincoded to snovault
mrmin123 Jan 26, 2017
bc34815
update upgrade scripts, loadxl, setup, and schema; provisionalClassif…
mrmin123 Jan 26, 2017
782cafa
undo test gdm data
mrmin123 Jan 26, 2017
74b8aad
update schema
mrmin123 Jan 26, 2017
57be085
revert user.py
mrmin123 Jan 26, 2017
cb55d5c
Merge remote-tracking branch 'origin/dev' into mc_snovault
mrmin123 Jan 26, 2017
53fb16b
remove potentially unneeded code; fix display of home page
mrmin123 Jan 30, 2017
cf7fd0c
get login half-working
mrmin123 Feb 2, 2017
c947f14
get subsequent pages to load
mrmin123 Feb 7, 2017
01be808
clean up curator_page
mrmin123 Feb 7, 2017
17baf5c
clean up mixin
mrmin123 Feb 7, 2017
5d08c20
Revert "clean up mixin"
mrmin123 Feb 10, 2017
16264db
Revert "clean up curator_page"
mrmin123 Feb 10, 2017
fe62454
re-fix page display; code cleanup
mrmin123 Feb 10, 2017
a5226a5
clean up auth0.py; fix login states
mrmin123 Feb 11, 2017
a41eade
de-indent search.js; update search.py to get dashboard to work
mrmin123 Feb 16, 2017
a8a3b4f
modify registry.js to look for lowercase view names, to make historyV…
mrmin123 Feb 17, 2017
607b833
merge dev; update computational upgrade script
mrmin123 Feb 17, 2017
5546290
half-fix gdm collections display
mrmin123 Feb 17, 2017
a568f0b
update interpretation to fix collections
mrmin123 Feb 17, 2017
0c83f73
Merge remote-tracking branch 'origin/dev' into 1287_mc_snovault
mrmin123 Feb 18, 2017
4cc422b
update curator.js to support new type names
mrmin123 Feb 18, 2017
a4e0673
revert changes to registry.js; begin fixing views from definition lev…
mrmin123 Feb 21, 2017
11ed07d
update curatorHistory calls to refer to new item types
mrmin123 Feb 21, 2017
12ffa2b
revise view registration to use new names
mrmin123 Feb 21, 2017
d0754ed
fix user info embedding
mrmin123 Feb 21, 2017
5bf004b
add setting of loadingComplete state in auth0 mixin; fixes edit-json …
mrmin123 Feb 21, 2017
cf6122e
get edits/puts working??
mrmin123 Feb 23, 2017
1b526ce
remove debug logs
mrmin123 Feb 23, 2017
97ac3b2
update linkTo for extra evidence
mrmin123 Feb 23, 2017
832c0a5
change type checks to use new type names on GCI pages
mrmin123 Feb 24, 2017
0633f58
further fixes to types
mrmin123 Feb 27, 2017
430ce2c
update updateInterpretationObj method to ping from database
mrmin123 Feb 27, 2017
9997c91
update pytest.ini and conftest.py
mrmin123 Feb 27, 2017
151f353
update versions; get tests running
mrmin123 Mar 3, 2017
755ac5b
add back test_indexing
mrmin123 Mar 3, 2017
15ba3e2
revise conftest
mrmin123 Mar 3, 2017
3c8accb
add back test_indexing.py; bugfixes to certain tests
mrmin123 Mar 3, 2017
11d34f0
additional fixes to tests and confs
mrmin123 Mar 3, 2017
fee0d33
fix additional tests; update testing.js
mrmin123 Mar 3, 2017
6f922e8
fix test_download tests
mrmin123 Mar 4, 2017
8b24d9c
fix additional tests
mrmin123 Mar 4, 2017
3b16ce4
remove console logs
mrmin123 Mar 6, 2017
c58cc11
update to backend to include snovault.app_version; fixes failing tests
mrmin123 Mar 7, 2017
b1a4b62
remove print statements
mrmin123 Mar 7, 2017
d57b169
fix fixtures test; python tests all fixed
mrmin123 Mar 7, 2017
9550b20
update casing of orphaphenotype data obj and update tests to use new url
mrmin123 Mar 9, 2017
843c22d
rename other camel-cased objects; upgrade provisionalClassification u…
mrmin123 Mar 9, 2017
ad4e342
fix mike cherry name in test
mrmin123 Mar 9, 2017
2c81f32
rename extra-evidence object
mrmin123 Mar 9, 2017
06be8d2
fix search, frontend and backend
mrmin123 Mar 9, 2017
5b152a5
return csrft with login
mrmin123 Mar 13, 2017
c80885b
implement wsgi-args for tests; add wsgi-args to travis.yml
mrmin123 Mar 14, 2017
a8d701f
update buildout to use custom snovault; update test
mrmin123 Mar 14, 2017
221b5c6
update readme
mrmin123 Mar 14, 2017
abb58b5
redirect custom snovault from mrmin123 to ClinGen repo
mrmin123 Mar 14, 2017
143e40a
rename javscript obj view registers
mrmin123 Mar 14, 2017
6db6b29
update search string from orphaPhenotype to orphaphenotype
mrmin123 Mar 14, 2017
3fe13cb
update search string from orphaPhenotype to orphaphenotype; remove co…
mrmin123 Mar 14, 2017
1a8137d
update viewers
mrmin123 Mar 14, 2017
c633ef5
update cloudconfig
mrmin123 Mar 15, 2017
9681ea7
update casing of orphaphenotype
mrmin123 Mar 15, 2017
b0f0954
rename orphaPhenotype to orphaphenotype
mrmin123 Mar 15, 2017
0fc043c
fix cloud-config
mrmin123 Mar 15, 2017
cff07d0
update versions
mrmin123 Mar 15, 2017
c8d81e8
Merge remote-tracking branch 'origin/dev' into 1287_mc_snovault
mrmin123 Mar 15, 2017
7d1f950
add libffi-dev
kilodalton Mar 16, 2017
dc19ffe
Merge remote-tracking branch 'origin/kd_test_1287_mc_snovault' into 1…
mrmin123 Mar 16, 2017
7c80932
update casing of orphaphenotype
mrmin123 Mar 16, 2017
43e32c3
change curator_page to CuratorPage
mrmin123 Mar 16, 2017
dc5b2ea
rename schema, inserts, types
mrmin123 Mar 16, 2017
593f3ed
update dump
mrmin123 Mar 16, 2017
2a778d9
tweak tests
mrmin123 Mar 16, 2017
d70dd50
make one-click login more reliable
mrmin123 Mar 16, 2017
f8b8db0
update commands in database-dumping.rst
mrmin123 Mar 17, 2017
94d2e44
update snovault version
mrmin123 Mar 24, 2017
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
6 changes: 4 additions & 2 deletions .travis.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -49,7 +49,7 @@ before_script:
--pidfile $SC_PIDFILE \
--tunnel-identifier $TRAVIS_JOB_NUMBER \
--user $SAUCE_USERNAME --api-key $SAUCE_ACCESS_KEY > /dev/null &
while test -f "$SC_PIDFILE" && test ! -f "$SC_READYFILE"; do
while test -f "$SC_PIDFILE" && test ! -f "$SC_READYFILE"; do
sleep 0.5
done
fi
Expand All @@ -67,7 +67,9 @@ script:
--browser-arg-int build "$TRAVIS_BUILD_NUMBER" \
--browser-arg-int idleTimeout 600 \
--browser-arg name "$TRAVIS_REPO_SLUG $TRAVIS_BRANCH $TRAVIS_COMMIT" \
--browser-arg browser "$BROWSER"
--browser-arg browser "$BROWSER" \
--wsgi-arg port_range.min 65525 \
--wsgi-arg port_range.max 65535
fi
after_script:
- >
Expand Down
Loading