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CI-975 - Update fetchngs to 1.12 #52

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Merged
nathanthorpe merged 2 commits into from
Dec 2, 2025
Merged

CI-975 - Update fetchngs to 1.12 #52

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4dfa035
update fetchngs and parameters
nathanthorpe Nov 29, 2025
31081dc
remove old param
nathanthorpe Dec 1, 2025
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2 changes: 0 additions & 2 deletions nf-core/fetchngs/1.7/process-compute.config
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Original file line number Diff line number Diff line change
@@ -1,5 +1,3 @@
params.force_sratools_download = true

process {
errorStrategy = { task.attempt <= 5 ? 'retry' : 'terminate' }
maxRetries = 2
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2 changes: 1 addition & 1 deletion nf-core/fetchngs/1.7/process-definition.json
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Expand Up @@ -39,7 +39,7 @@
"repository": "GITHUBPUBLIC",
"script": "main.nf",
"uri": "nf-core/fetchngs",
"version": "1.10.0"
"version": "1.12.0"
},
"usesSampleSheet": false,
"computeDefaults": [
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5 changes: 3 additions & 2 deletions nf-core/fetchngs/1.7/process-input.json
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@@ -1,8 +1,9 @@
{
"input": "$.params.dataset.s3|/|$.params.dataset.paramJson.input",
"input": "$.dataset.params.input",
"download_method": "$.dataset.params.download_method",
"dbgap_key": "$.dataset.params.dbgap_key",
"nf_core_pipeline": "$.dataset.params.pipeline",
"outdir": "$.dataset.dataPath",
"input_type": "sra",
"hostnames": "test",
"schema_ignore_params": "hostnames"
}