An unofficial PyTorch implementation of the Dhaka model, described in:
Sabrina Rashid, Sohrab Shah, Ziv Bar-Joseph, Ravi Pandya, Dhaka: variational autoencoder for unmasking tumor heterogeneity from single cell genomic data, Bioinformatics, Volume 37, Issue 11, 1 June 2021, Pages 1535–1543
For the official MIT-licensed implementation in Keras see here.
Clone the repository:
$ git clone https://github.com/BoevaLab/CanSig-Supplementary-Information.git
Go to the Dhaka directory:
$ cd Dhaka-implementation
Install the package:
$ pip install .
Optionally, you can also run unit tests:
$ pip install ".[test]"
$ pytest