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Add miRBind2 - first predictions#96

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zacharopoulou wants to merge 1 commit into
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mirbind_standardized
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Add miRBind2 - first predictions#96
zacharopoulou wants to merge 1 commit into
mainfrom
mirbind_standardized

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@zacharopoulou
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  • Expects the user to copy the raw miRBind2 TSV into the mirbind2/ pipeline directory.
  • Uses existing miRBase 22.1 mature.fa to annotate miRNA_Name to MIMAT
  • Emits the standard predictor schema:
    Ensembl_ID, Gene_Name, miRNA_ID, miRNA_Name, Score
  • Keeps missing Gene_Symbol values as blank Gene_Name
  • Treats miRBind2 scores as signed raw repression scores with lower_is_stronger

@zacharopoulou zacharopoulou requested a review from dimostzim June 1, 2026 17:06
@dimostzim
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looks ok,

do not commit mirbind2_pipeline.log
also worth checking that standardized output has no duplicate Ensembl_ID/miRNA_ID rows after MIMAT mapping

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