Remove legacy CLI, switch to plugin-only mode#11
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Remove the entire CLI system (install, doctor, repair, status, reminders, tui), settings merger, templates, symlink utilities, and all legacy-only modules. Claude Auto now requires plugin mode (CLAUDE_PLUGIN_ROOT/CLAUDE_PLUGIN_DATA). Removed: src/cli/, bin/, templates/, settings-merger, linker, gitignore-manager, state-manager, root-finder, config-loader, e2e tests, settings-template tests. Removed dependencies: commander, cosmiconfig, yaml. plea: all removed files are cohesive legacy system, must be removed together
Skills run config.js as a shell command where CLAUDE_PLUGIN_DATA may not be set. Only CLAUDE_PLUGIN_ROOT is required now.
Skills run as shell commands where CLAUDE_PLUGIN_ROOT env var is not set. The config script now derives the plugin root from its own __dirname. resolvePathsFromEnv accepts an optional explicit pluginRoot.
Rewrite installation.md, api-reference.md for plugin-only mode. Update getting-started, index, architecture, configuration, validators-guide, reminders-guide, hooks-guide to remove all npx CLI and symlink references. Delete npm-package-test.yml (tested legacy install) and install-local-spec.md. plea: all doc changes are cohesive, must ship together
Add marketplace.json for plugin registry. Sync plugin/marketplace versions in CI release workflow. Track dist/bundle/scripts/ in git (required for plugin mode). Rebuild bundles in pre-commit hook.
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