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state tx infer doesn't output predicted .X when using embed-key

Status: Open.

#230 In ArcInstitute/state;

· asalimih opened on Oct 4, 2025

Can untrained drugs be used to make predictions?

Status: Open.

#229 In ArcInstitute/state;

· tiankongkongkongruye opened on Oct 2, 2025

Validation data and test data are overlapped for tahoe-100m holdout experiment

Status: Open.

#226 In ArcInstitute/state;

· KatarinaYuan opened on Sep 26, 2025

ST training with and without SE embeddings

Status: Open.

#225 In ArcInstitute/state;

· ekinda opened on Sep 25, 2025

wandb config issues

Status: Open.

#224 In ArcInstitute/state;

· cconnors8 opened on Sep 24, 2025

Where are var_dims.pkl and pert_onehot_map.pt files from Replogle-Nadig-Models ?

Status: Open.

#219 In ArcInstitute/state;

· raphaelmourad opened on Sep 22, 2025

FileNotFoundError: Could not find data module at test_replogle/hepg2_holdout/data_module.torch?

Status: Open.

#218 In ArcInstitute/state;

· Shaun-66 opened on Sep 21, 2025

AttributeError: 'PerturbationDataModule' object has no attribute 'celltype_onehot_map'. Did you mean: 'cell_type_onehot_map'?

Status: Open.

#209 In ArcInstitute/state;

· r-sayar opened on Sep 19, 2025

Conflict between SE model training and publish

Status: Open.

#202 In ArcInstitute/state;

· ChenYouyuan2020 opened on Sep 16, 2025

Questions about fine-tuning and combinatorial perturbation prediction.

Status: Open.

#188 In ArcInstitute/state;

· yyLIU12138 opened on Sep 1, 2025

Some question about state tx infer

Status: Open.

#187 In ArcInstitute/state;

· raphaelmourad opened on Aug 26, 2025

scGPTPerturbationDataset is not used

Status: Open.

#186 In ArcInstitute/state;

· Kuanzhaipcx opened on Aug 25, 2025