Allen Institute for Neural Dynamics
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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openscope-community-predictive-processing
openscope-community-predictive-processing PublicThis repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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supervoxel-loss
supervoxel-loss PublicEfficient connectivity-preserving loss function for training neural networks to perform instance segmentation.
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ibl-ephys-alignment-gui
ibl-ephys-alignment-gui PublicForked from int-brain-lab/iblapps
Tool for aligning electrophysiological features to anatomical landmarks
Repositories
- aind-dynamic-foraging-basic-analysis Public
compute behavioral metrics and generate basic plottings for the dynamic foraging task
- dynamic-foraging-processing-pipeline Public
Pipeline to process dynamic foraging behavior only data acquired on new standard
- dandiset-explorer-capsule Public
- aind-dft-ephys-analysis Public
shared library for dynamic foraging task (DFT) - neuropixels analysis
- data-curation-aind-analysis-wrapper Public Forked from AllenNeuralDynamics/aind-analysis-wrapper-template
Rachel's capsule for data-curation. This serves a wrapper for running analysis functions on input data
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- aind-ophys-extraction Public
Uses a mix-and-match approach to combine Cellpose, Suite2p, and CaImAn for cell detection and signal extraction.
- aind-deepephys-spikesort-kilosort4 Public Forked from AllenNeuralDynamics/aind-ephys-spikesort-kilosort4
CodeOcean capsule for ephys spike sorting with Kilosort4
- dynamic_foraging_qc_capsule Public
Capsule to qc dynamic foraging data acquired on new acquisition standard
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