NAMESPACE

useDynLib(NECorr, .registration=TRUE)
importFrom(Rcpp, evalCpp,sourceCpp)
export(NECorr)
export(multiCorr)
export(NetTopology)
export(DE.ranking)
export(ScalN)
export(scaling_param)
export(fishersMethod)
export(indexing.network)
export(ts.IUT)
export(IUTtsi)
export(IUTtse)
export(IUTest)
export(hub_edge_significance)
export(activator_significant)
export(linked_act_hub_net)
export(linked_eff_hub_net)
export(DiscNULLrow)
export(factOrg)
export(TSI)
export(TSE)
export(mergeMetricsByGene)
export(multi_corr_necorr)

import(tibble)
import(purrr)
exportPattern("^[[:alpha:]]+")
importFrom("RcppParallel","RcppParallelLibs","setThreadOptions")
importFrom("scales", "rescale")
importFrom("grDevices", "colorRampPalette", "dev.off", "pdf")
importFrom("utils", "read.csv", "read.delim", "read.table",
           "write.csv", "write.table", "head", "tail","methods", "flush.console")
importFrom("Biobase", "ExpressionSet")
importFrom("limma", "eBayes", "topTable", "contrasts.fit", "makeContrasts",
           "lmFit")
importFrom("htmlwidgets", "saveWidget")
importFrom("tidyr", "pivot_longer", "all_of")
importFrom("patchwork", "plot_layout")
importFrom("matrixStats", "rowMeans2", "rowSums2")
importFrom("data.table", "setDT", ".SD", "fread", "fwrite", "setnames", "setkey",
           "rbindlist", "frankv", "is.data.table", "as.data.table", ":=", "data.table",
           "fifelse", "setcolorder")
importFrom("dplyr", "summarise", "group_by", "combine", "left_join",
           "mutate", "select", "syms", "arrange", "ungroup", "starts_with",
           "across", "rowwise", "c_across")
importFrom("rlang", ".data")
importFrom("parallel", "mcmapply", "makeCluster", "clusterExport", "clusterEvalQ",
           "parLapply", "stopCluster", "detectCores")
importFrom("igraph", "V<-", "degree", "graph.data.frame", "betweenness", "evcent",
           "V", "page.rank", "eigen_centrality", "page_rank" , "transitivity",
           "layout.fruchterman.reingold", "graph_from_data_frame")
importFrom("grDevices", "colorRampPalette", "dev.off", "pdf")
importFrom("stats", "complete.cases","model.matrix", "pchisq", "cor.test","p.adjust",
           "predict", "qt", "var", "pt", "filter", "pnorm", "setNames", "reorder")
importFrom("ggplot2", "ggplot", "ggsave")
importFrom("ggraph", "ggraph")
importFrom("visNetwork", "visNetwork")
import("impute")
import("WGCNA")