diff --git a/.github/workflows/create_release_tag.yaml b/.github/workflows/create_release_tag.yaml index b3737654b..b8ca533ba 100644 --- a/.github/workflows/create_release_tag.yaml +++ b/.github/workflows/create_release_tag.yaml @@ -17,19 +17,18 @@ jobs: fetch-depth: 0 token: ${{ secrets.LIBRARY_RELEASE_PAT }} - - name: Install poetry - run: pipx install poetry - - name: Set up Python 3.11 uses: actions/setup-python@v5 with: python-version: "3.11" - cache: "poetry" + + - name: Install uv + uses: astral-sh/setup-uv@v5 - name: Get Version from pyproject.toml id: get_version run: | - VERSION=$(poetry version -s) + VERSION=$(uv version --short) echo "VERSION=${VERSION}" >> $GITHUB_OUTPUT echo "TAG=v${VERSION}" >> $GITHUB_OUTPUT diff --git a/.github/workflows/integration.yaml b/.github/workflows/integration.yaml index e2f800d2d..e24aa3341 100644 --- a/.github/workflows/integration.yaml +++ b/.github/workflows/integration.yaml @@ -22,22 +22,21 @@ jobs: steps: - uses: actions/checkout@v4 - - name: Install poetry - run: pipx install poetry - - name: Set up Python 3.11 uses: actions/setup-python@v5 with: python-version: '3.11' - cache: 'poetry' + + - name: Install uv + uses: astral-sh/setup-uv@v5 + with: + enable-cache: true - name: Install Python Dependencies run: | - poetry config virtualenvs.in-project true - poetry env use python3.11 - poetry install -E huggingface -E llm - poetry run pip install torch==2.0.1 --extra-index-url https://download.pytorch.org/whl/cpu - poetry run pip install aequitas fairlearn vl-convert-python + uv sync --extra huggingface --extra llm --group dev + uv pip install torch==2.0.1 --extra-index-url https://download.pytorch.org/whl/cpu + uv pip install aequitas fairlearn vl-convert-python - name: Install R Dependencies run: | @@ -45,7 +44,7 @@ jobs: sudo apt install r-base r-base-dev - name: Build the package - run: poetry build + run: uv build - name: Remove Build Environment run: rm -rf .venv diff --git a/.github/workflows/pypi.yaml b/.github/workflows/pypi.yaml index 95d004c52..96b5bf2c5 100644 --- a/.github/workflows/pypi.yaml +++ b/.github/workflows/pypi.yaml @@ -17,25 +17,26 @@ jobs: steps: - uses: actions/checkout@v4 - - name: Install poetry - run: pipx install poetry - - name: Set up Python 3.11 uses: actions/setup-python@v5 with: python-version: '3.11' - cache: 'poetry' + + - name: Install uv + uses: astral-sh/setup-uv@v5 + with: + enable-cache: true - name: Install Dependencies - run: poetry env use python3.11 && poetry install + run: uv sync --group dev - name: Update twine - run: poetry run pip install --upgrade twine + run: uv pip install --upgrade twine - name: Publish to PyPI env: - PYPI_USERNAME: __token__ - PYPI_PASSWORD: ${{ secrets.POETRY_PYPI_TOKEN_PYPI }} + UV_PUBLISH_USERNAME: __token__ + UV_PUBLISH_PASSWORD: ${{ secrets.POETRY_PYPI_TOKEN_PYPI }} run: | - poetry build - poetry publish -u $PYPI_USERNAME -p $PYPI_PASSWORD + uv build + uv publish diff --git a/.github/workflows/python.yaml b/.github/workflows/python.yaml index 7add5171e..0c7088ca7 100644 --- a/.github/workflows/python.yaml +++ b/.github/workflows/python.yaml @@ -47,21 +47,21 @@ jobs: - name: Free Disk Space run: ./disk_clean.sh - - name: Install poetry - run: pipx install poetry - - name: Set up Python 3.9 uses: actions/setup-python@v5 with: python-version: '3.9' - cache: 'poetry' + + - name: Install uv + uses: astral-sh/setup-uv@v5 + with: + enable-cache: true - name: Install Dependencies run: | - poetry env use python3.9 - poetry install --all-extras - poetry run pip install torch==2.0.1 --extra-index-url https://download.pytorch.org/whl/cpu - poetry run pip install aequitas fairlearn vl-convert-python + uv sync --all-extras --group dev + uv pip install torch==2.0.1 --extra-index-url https://download.pytorch.org/whl/cpu + uv pip install aequitas fairlearn vl-convert-python - name: Ensure notebooks have no printed outputs run: make ensure-clean-notebooks diff --git a/.gitignore b/.gitignore index be3cd74c1..c2ab7edf4 100644 --- a/.gitignore +++ b/.gitignore @@ -95,12 +95,7 @@ ipython_config.py # install all needed dependencies. #Pipfile.lock -# poetry -# Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control. -# This is especially recommended for binary packages to ensure reproducibility, and is more -# commonly ignored for libraries. -# https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control -#poetry.lock +# uv lockfile is committed for reproducible dev/CI installs # PEP 582; used by e.g. github.com/David-OConnor/pyflow __pypackages__/ diff --git a/Makefile b/Makefile index de573b998..a52d9c4b5 100644 --- a/Makefile +++ b/Makefile @@ -7,48 +7,48 @@ __check_defined = \ $(error Undefined $1$(if $2, ($2)))) format: - poetry run black validmind - poetry run isort validmind + uv run black validmind + uv run isort validmind lint: # don't check max line length for now since black already takes care of it # and flake8 is too strict where it doesn't need to be - poetry run flake8 validmind --config .flake8 + uv run flake8 validmind --config .flake8 install: - poetry install --all-extras - poetry run pre-commit install --hook-type pre-commit --hook-type pre-push + uv sync --all-extras --group dev + uv run pre-commit install --hook-type pre-commit --hook-type pre-push build: - poetry build + uv build test: ifdef ONLY # make test ONLY="tests.test_template tests.test_metadata" - poetry run python -m unittest $(ONLY) + uv run python -m unittest $(ONLY) else - poetry run python -m unittest discover tests + uv run python -m unittest discover tests endif test-unit: - poetry run python -m unittest "tests.test_unit_tests" + uv run python -m unittest "tests.test_unit_tests" test-integration: - poetry run python scripts/run_e2e_notebooks.py + uv run python scripts/run_e2e_notebooks.py docs: rm -rf docs/_build ifeq ($(shell uname),Darwin) - poetry run pdoc validmind !validmind.tests.data_validation.Protected* -d google -t docs/templates --no-show-source --logo https://vmai.s3.us-west-1.amazonaws.com/validmind-logo.svg --favicon https://vmai.s3.us-west-1.amazonaws.com/favicon.ico -o docs/_build + uv run pdoc validmind !validmind.tests.data_validation.Protected* -d google -t docs/templates --no-show-source --logo https://vmai.s3.us-west-1.amazonaws.com/validmind-logo.svg --favicon https://vmai.s3.us-west-1.amazonaws.com/favicon.ico -o docs/_build else - poetry run pdoc validmind -d google -t docs/templates --no-show-source --logo https://vmai.s3.us-west-1.amazonaws.com/validmind-logo.svg --favicon https://vmai.s3.us-west-1.amazonaws.com/favicon.ico -o docs/_build + uv run pdoc validmind -d google -t docs/templates --no-show-source --logo https://vmai.s3.us-west-1.amazonaws.com/validmind-logo.svg --favicon https://vmai.s3.us-west-1.amazonaws.com/favicon.ico -o docs/_build endif docs-serve: ifeq ($(shell uname),Darwin) - poetry run pdoc validmind !validmind.tests.data_validation.Protected* -d google -t docs/templates --no-show-source --logo https://vmai.s3.us-west-1.amazonaws.com/validmind-logo.svg --favicon https://vmai.s3.us-west-1.amazonaws.com/favicon.ico + uv run pdoc validmind !validmind.tests.data_validation.Protected* -d google -t docs/templates --no-show-source --logo https://vmai.s3.us-west-1.amazonaws.com/validmind-logo.svg --favicon https://vmai.s3.us-west-1.amazonaws.com/favicon.ico else - poetry run pdoc validmind -d google -t docs/templates --no-show-source --logo https://vmai.s3.us-west-1.amazonaws.com/validmind-logo.svg --favicon https://vmai.s3.us-west-1.amazonaws.com/favicon.ico + uv run pdoc validmind -d google -t docs/templates --no-show-source --logo https://vmai.s3.us-west-1.amazonaws.com/validmind-logo.svg --favicon https://vmai.s3.us-west-1.amazonaws.com/favicon.ico endif quarto-docs: @@ -58,37 +58,37 @@ quarto-docs: mkdir -p docs/validmind # Generate API JSON dump - poetry run python -m griffe dump validmind -f -o docs/validmind.json -d google -r -U + uv run python -m griffe dump validmind -f -o docs/validmind.json -d google -r -U # Generate Quarto docs from templates - poetry run python scripts/generate_quarto_docs.py + uv run python scripts/generate_quarto_docs.py version: @:$(call check_defined, tag, new semver version tag to use on pyproject.toml) - @poetry version $(tag) - @echo "__version__ = \"$$(poetry version -s)\"" > validmind/__version__.py - @sed -i '' 's/^Version: .*/Version: '"$$(poetry version -s)"'/' r/validmind/DESCRIPTION - @echo "Version updated to $$(poetry version -s)" - @echo "Commiting changes to pyproject.toml, __version__.py and r/validmind/DESCRIPTION with message: $$(poetry version -s)" + @if echo "$(tag)" | grep -Eq '^(patch|minor|major)$$'; then uv version --bump $(tag); else uv version "$(tag)"; fi + @echo "__version__ = \"$$(uv version --short)\"" > validmind/__version__.py + @sed -i '' 's/^Version: .*/Version: '"$$(uv version --short)"'/' r/validmind/DESCRIPTION + @echo "Version updated to $$(uv version --short)" + @echo "Commiting changes to pyproject.toml, __version__.py and r/validmind/DESCRIPTION with message: $$(uv version --short)" @git add pyproject.toml validmind/__version__.py r/validmind/DESCRIPTION - @git commit -m "$$(poetry version -s)" + @git commit -m "$$(uv version --short)" generate-test-id-types: - poetry run python scripts/generate_test_id_type.py + uv run python scripts/generate_test_id_type.py copyright: - poetry run python scripts/copyright_files.py - poetry run python scripts/copyright_notebooks.py + uv run python scripts/copyright_files.py + uv run python scripts/copyright_notebooks.py verify-copyright: - poetry run python scripts/verify_copyright.py - poetry run python scripts/verify_notebook_copyright.py + uv run python scripts/verify_copyright.py + uv run python scripts/verify_notebook_copyright.py verify-exposed-credentials: - poetry run python scripts/credentials_check.py + uv run python scripts/credentials_check.py ensure-clean-notebooks: - poetry run python scripts/ensure_clean_notebooks.py + uv run python scripts/ensure_clean_notebooks.py # Quick target to run all checks check: copyright format lint test verify-copyright verify-exposed-credentials ensure-clean-notebooks @@ -96,5 +96,5 @@ check: copyright format lint test verify-copyright verify-exposed-credentials en .PHONY: docs quarto-docs notebook: - poetry run python notebooks/templates/e2e_template.py + uv run python notebooks/templates/e2e_template.py git status | grep -v 'notebooks/templates' diff --git a/README.md b/README.md index 4078f355f..d611bc33f 100644 --- a/README.md +++ b/README.md @@ -93,7 +93,7 @@ export VALIDMIND_PII_DETECTION=disabled ### Install dependencies -- Ensure you have `poetry` installed: +- Ensure you have `uv` installed: - After cloning this repo, run: @@ -103,11 +103,11 @@ make install This will install the dependencies and git hooks for the project. -- To run Jupyter notebooks using the source code from the repo, you can use `poetry` to register +- To run Jupyter notebooks using the source code from the repo, you can use `uv` to register a new kernel with Jupyter: ```bash -poetry run python -m ipykernel install --user --name validmind --display-name "ValidMind Library" +uv run python -m ipykernel install --user --name validmind --display-name "ValidMind Library" ``` ### Installing LLM validation dependencies @@ -115,7 +115,7 @@ poetry run python -m ipykernel install --user --name validmind --display-name "V You can install the `transformers`, `torch` and `openai` dependencies using the `llm` extra. This will install the Hugging Face transformers and PyTorch libraries as well as the OpenAI SDK for running the LLM validation examples: ```bash -poetry install --extras llm +uv sync --extra llm --group dev ``` ### Setting up R support @@ -191,7 +191,7 @@ Make sure you bump the package version before merging a PR with the following co make version tag=patch ``` -The value of `tag` corresponds to one of the options provided by Poetry: +The value of `tag` is either `patch`, `minor`, or `major` (passed to `uv version --bump`), or an explicit version string such as `2.14.0` (passed to `uv version`). ## Generating summaries for test descriptions @@ -200,13 +200,13 @@ Use `add_test_description.py` to generate a draft descriptions for a test using Entire directory: ```bash -poetry run python scripts/add_test_description.py review validmind/tests/example_directory/ +uv run python scripts/add_test_description.py review validmind/tests/example_directory/ ``` Single file: ```bash -poetry run python scripts/add_test_description.py review validmind/tests/ongoing_monitoring/FeatureDrift.py +uv run python scripts/add_test_description.py review validmind/tests/ongoing_monitoring/FeatureDrift.py ``` ## Adding a copyright header @@ -225,7 +225,6 @@ make copyright If you run into an error related to the ValidMind wheel, try: ```bash -poetry add wheel -poetry update wheel -poetry install +uv lock --upgrade-package wheel +uv sync --all-extras --group dev ``` diff --git a/notebooks/code_sharing/r_demo/r-ecm-model.ipynb b/notebooks/code_sharing/r_demo/r-ecm-model.ipynb index c2e7c783d..c0059139c 100644 --- a/notebooks/code_sharing/r_demo/r-ecm-model.ipynb +++ b/notebooks/code_sharing/r_demo/r-ecm-model.ipynb @@ -30,7 +30,7 @@ "For helpful shortcuts, run this in a terminal:\n", "\n", "```bash\n", - "poetry run jupyter labextension install @techrah/text-shortcuts\n", + "uv run jupyter labextension install @techrah/text-shortcuts\n", "```\n", "\n", "#### 4. 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-[metadata] -lock-version = "2.1" -python-versions = ">=3.9,<3.15" -content-hash = "b596dabeb3fce78d4634ed1da7ef7fc1936a8cb225877e0ac2f34c2c04260bb4" diff --git a/pyproject.toml b/pyproject.toml index 74aa006b2..03325b4b8 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -116,32 +116,37 @@ pii-detection = [ "presidio-structured", ] -[tool.poetry.group.dev.dependencies] -black = "^22.1.0" -click = "*" -cython = "^0.29.34" -docstring_parser = "*" -flake8 = "^7.0.0" -griffe = "*" -ipykernel = "^6.22.0" -isort = "^5.12.0" -jupyter = "^1.0.0" -mdformat = "*" -papermill = "^2.4.0" -pdoc = "^14.4.0" -pre-commit = "^3.3.3" -sphinx = "^6.1.3" -sphinx-markdown-builder = "^0.5.5" -sphinx-rtd-theme = "^1.2.0" -twine = "^4.0.2" +[dependency-groups] +dev = [ + "black>=22.1.0,<23", + "click", + "cython>=0.29.34,<0.30", + "docstring-parser", + "flake8>=7.0.0,<8", + "griffe", + "ipykernel>=6.22.0,<7", + "isort>=5.12.0,<6", + "jupyter>=1.0.0,<2", + "mdformat", + "papermill>=2.4.0,<3", + "pdoc>=14.4.0,<15", + "pre-commit>=3.3.3,<4", + "sphinx>=6.1.3,<7", + "sphinx-markdown-builder>=0.5.5,<0.6", + "sphinx-rtd-theme>=1.2.0,<2", + "twine>=4.0.2,<5", +] [project.scripts] vm-create-new-test = "scripts.create_new_test:generate_test" [build-system] -build-backend = "poetry.core.masonry.api" -requires = ["poetry-core>=1.9.0"] +requires = ["hatchling>=1.26.0"] +build-backend = "hatchling.build" [tool.isort] known_first_party = "validmind" profile = "black" + +[tool.uv] +exclude-newer = "7 days" diff --git a/r/validmind/README.md b/r/validmind/README.md index d7b7b9c3a..ea2391ba5 100644 --- a/r/validmind/README.md +++ b/r/validmind/README.md @@ -64,7 +64,7 @@ R reads this file automatically on startup, before any code runs. Relative paths ### Option 2: `.env` file in the repo -If the project uses Poetry with in-project virtualenvs (`.venv/` inside the repo), add to the repo's `.env` file: +If the project uses `uv` (default in-repo virtualenv at `.venv/`), add to the repo's `.env` file: ``` VALIDMIND_PYTHON=.venv/bin/python diff --git a/scripts/README.md b/scripts/README.md index a9d0565d0..98e5f1ad1 100644 --- a/scripts/README.md +++ b/scripts/README.md @@ -1,12 +1,12 @@ # Creating a new test -All ValidMind tests are in the `validmind/tests/` directory. Each file should be named using Camel Case and should have a single test class that matches the file name. For example, `MyNewTest.py` should have the test `class MyNewTest`. This class should inherit from `validmind.vm_models.Metric` or `validmind.vm_models.ThresholdTest` depending on the type of test you are creating. +All ValidMind tests are in the `validmind/tests/` directory. Each file should be named using Camel Case and should have a single test class that matches the file name. For example, `MyNewTest.py` should have the test `class MyNewTest`. This class should inherit from `validmind.vm_models.Metric` or `validmind.vm_models.ThresholdTest` depending on the type of test you are creating. The tests are separated into subdirectories based on the category and type of test. For example, `validmind/tests/model_validation/sklearn` contains all of the model validation tests for sklearn-compatible models. There are two subdirectories in this folder: `metrics/` and `threshold_tests/` that contain the different types of tests. Any sub category can be used here and the `__init__.py` file will automatically pick up the tests. Please see the notebook `listing-and-loading-tests.ipynb` for more information and examples and to learn about how the directory relates to the test's ID which is used across the ValidMind Platform. -To create a new test, you can use the create_new_test.py script to generate a metric or threshold test. This script will create a new test file in the appropriate directory and will also create a new test class in that file. It is registered as a custom Poetry script in the `pyproject.toml` and it can be used as follows: +To create a new test, you can use the create_new_test.py script to generate a metric or threshold test. This script will create a new test file in the appropriate directory and will also create a new test class in that file. It is registered as a console script in `pyproject.toml` and it can be used as follows: ```bash generate-test --help # see the usage instructions diff --git a/scripts/bulk_ai_test_updates.py b/scripts/bulk_ai_test_updates.py index 6fbc82a95..3f33dbb69 100644 --- a/scripts/bulk_ai_test_updates.py +++ b/scripts/bulk_ai_test_updates.py @@ -2,7 +2,7 @@ Usage: - poetry run python scripts/bulk_ai_test_updates.py --action + uv run python scripts/bulk_ai_test_updates.py --action - path: path to a test file or directory containing test files - action: `add_description` or `add_raw_data` @@ -637,7 +637,7 @@ def main(action, path, model): func(file) # run black on the tests directory - subprocess.run(["poetry", "run", "black", "validmind/tests"]) + subprocess.run(["uv", "run", "black", "validmind/tests"]) if __name__ == "__main__": diff --git a/scripts/bulk_unit_tests_updates.py b/scripts/bulk_unit_tests_updates.py index c7ddfd912..61b635588 100644 --- a/scripts/bulk_unit_tests_updates.py +++ b/scripts/bulk_unit_tests_updates.py @@ -266,7 +266,7 @@ def main(path, update_only): add_or_update_unit_test(vm_test_path, unit_test_path) # run black on the tests directory - subprocess.run(["poetry", "run", "black", UNIT_TESTS_DIR]) + subprocess.run(["uv", "run", "black", UNIT_TESTS_DIR]) if __name__ == "__main__": diff --git a/scripts/copyright_files.py b/scripts/copyright_files.py index 51afce0e2..29766b42e 100644 --- a/scripts/copyright_files.py +++ b/scripts/copyright_files.py @@ -5,7 +5,7 @@ block to all Python files in the package directory. How to use: - poetry run python scripts/copyright_files.py + uv run python scripts/copyright_files.py """ import os @@ -62,7 +62,7 @@ def copyright_python_file(root, file): del lines[start_index:end_index + 1] # Insert the new copyright at start_index lines.insert(start_index, copyright) - + # Write the modified contents back to the file with open(os.path.join(root, file), "w") as f: f.writelines(lines) diff --git a/scripts/verify_copyright.py b/scripts/verify_copyright.py index e1ae89ce7..f0b9e24da 100644 --- a/scripts/verify_copyright.py +++ b/scripts/verify_copyright.py @@ -10,7 +10,7 @@ ValidMind copyright block as a header. How to use: - poetry run python scripts/verify_copyright.py + uv run python scripts/verify_copyright.py """ import os diff --git a/scripts/verify_notebook_copyright.py b/scripts/verify_notebook_copyright.py index b976a4995..e7feb61b3 100644 --- a/scripts/verify_notebook_copyright.py +++ b/scripts/verify_notebook_copyright.py @@ -10,7 +10,7 @@ ValidMind copyright cell. 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