From dd2f7dd191a0bd1869f4f8c4c78cfa0bd3470afd Mon Sep 17 00:00:00 2001 From: kdcurry Date: Fri, 16 Jan 2026 16:08:16 +0100 Subject: [PATCH 1/2] Add SILVA v138.2 database information to README --- README.md | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 70ddd70..974e911 100644 --- a/README.md +++ b/README.md @@ -167,7 +167,9 @@ Our pre-built databases and files\scripts used to construct the databases are st | Database | Command | | :------- | :----- | |[RDP v11.5](https://rdp.cme.msu.edu/) with NCBI taxonomy has been pre-built for Emu v3.0+. | `export EMU_PREBUILT_DB='rdp'`| -|[SILVA v138.1](https://www.arb-silva.de/) has been pre-built for Emu v3.0+ from the [DADA2 SILVA species-level database](https://zenodo.org/record/4587955#.YvqmSezMLOQ).| `export EMU_PREBUILT_DB='silva'`| +|[SILVA v138.1](https://www.arb-silva.de/) has been pre-built for Emu v3.0+ from the [DADA2 SILVA species-level database] +(https://zenodo.org/record/4587955#.YvqmSezMLOQ).| `export EMU_PREBUILT_DB='silva'`| +|[SILVA v138.2](https://www.arb-silva.de/) has been built courtesy of @maddne. This database has not yet been tested or validated with Emu.| `export EMU_PREBUILT_DB='silva-138.2'`| |[UNITE](https://unite.ut.ee/repository.php) [general fasta v8.3 fungi](https://dx.doi.org/10.15156/BIO/1280049) has been pre-built for Emu v3.0+. This database has not yet been tested or validated with Emu.| `export EMU_PREBUILT_DB='unite-fungi'`| |[UNITE](https://unite.ut.ee/repository.php) [general fasta v8.3 all eukaryotes](https://dx.doi.org/10.15156/BIO/1280127) has been pre-built for Emu v3.0+. This database has not yet been tested or validated with Emu.| `export EMU_PREBUILT_DB='unite-all'`| From 7cf10ff1e405a829615ca66b9a8c1bdaf3bed7ab Mon Sep 17 00:00:00 2001 From: kdcurry Date: Fri, 16 Jan 2026 16:10:03 +0100 Subject: [PATCH 2/2] Fix formatting of SILVA v138.1 database entry --- README.md | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/README.md b/README.md index 974e911..bddf0a5 100644 --- a/README.md +++ b/README.md @@ -167,8 +167,7 @@ Our pre-built databases and files\scripts used to construct the databases are st | Database | Command | | :------- | :----- | |[RDP v11.5](https://rdp.cme.msu.edu/) with NCBI taxonomy has been pre-built for Emu v3.0+. | `export EMU_PREBUILT_DB='rdp'`| -|[SILVA v138.1](https://www.arb-silva.de/) has been pre-built for Emu v3.0+ from the [DADA2 SILVA species-level database] -(https://zenodo.org/record/4587955#.YvqmSezMLOQ).| `export EMU_PREBUILT_DB='silva'`| +|[SILVA v138.1](https://www.arb-silva.de/) has been pre-built for Emu v3.0+ from the [DADA2 SILVA species-level database](https://zenodo.org/record/4587955#.YvqmSezMLOQ).| `export EMU_PREBUILT_DB='silva'`| |[SILVA v138.2](https://www.arb-silva.de/) has been built courtesy of @maddne. This database has not yet been tested or validated with Emu.| `export EMU_PREBUILT_DB='silva-138.2'`| |[UNITE](https://unite.ut.ee/repository.php) [general fasta v8.3 fungi](https://dx.doi.org/10.15156/BIO/1280049) has been pre-built for Emu v3.0+. This database has not yet been tested or validated with Emu.| `export EMU_PREBUILT_DB='unite-fungi'`| |[UNITE](https://unite.ut.ee/repository.php) [general fasta v8.3 all eukaryotes](https://dx.doi.org/10.15156/BIO/1280127) has been pre-built for Emu v3.0+. This database has not yet been tested or validated with Emu.| `export EMU_PREBUILT_DB='unite-all'`|