chore: update dependencies and improve upgrade script

- Updated @stevenkellner/typescript-common-functionality from ^1.0.49 to ^1.0.54
- Updated @eslint/js from ^9.26.0 to ^9.27.0
- Updated @types/node from ^22.15.3 to ^22.15.18
- Updated @typescript-eslint/eslint-plugin and @typescript-eslint/parser from ^8.31.1 to ^8.32.1
- Updated eslint from ^9.26.0 to ^9.27.0
- Updated globals from ^16.0.0 to ^16.1.0
- Updated mocha from ^11.2.2 to ^11.3.0
- Updated typescript-eslint from ^8.31.1 to ^8.32.1
- Improved upgrade script to clean npm cache before upgrading dependencies

Author: stevenkellner