Version 2.0 statTarget, the HR images are not there, and statAnalysis does not work... #2
Description
Hi Zhang,
In the version 2.0 or bioconductor(3.8) , the statTargetGUI function do not output the HR image or lolot for each features for saving the time.
Alternatively, you can use the shiftCor function to get the HR image.
The test code is here. You can try. (Key parameters: plot=TRUE)
datpath <- system.file('extdata',package = 'statTarget')
samPeno <- paste(datpath,'MTBLS79_sampleList.csv', sep='/')
samFile <- paste(datpath,'MTBLS79.csv', sep='/')
shiftCor(samPeno,samFile, Frule = 0.8, MLmethod = 'QCRFSC', QCspan = 0,imputeM = ‘KNN’,plot=TRUE)
栾合密 (Hemi Luan, PhD)
南方科技大学/前沿与交叉科学研究院
深圳市南山区学苑大道1088号
SUSTech Academy for Advanced Interdisciplinary Studies
Southern University of Science and Technology
1088 Xueyuan Rd., Xili, Nanshan District Shenzhen,Guangdong,China 518055
From: Zhang, Li
Sent: Wednesday, October 31, 2018 4:53:05 PM
To: luanhm; hemi.luan
Subject: Re: statTarget
Version 2.0 statTarget, the HR images are not there, and statAnalysis does not work…
From: Zhang, Li
Sent: Wednesday, October 31, 2018 3:16:58 PM
To: luanhm; hemi.luan
Subject: Re: statTarget
Hi Hemi
Thanks very much to replying my question.
I somehow get the right interface now after updating R to 3.5... I just start to learn a little R, I am more of mass spectrometrist but wish to learn more about data processing. Your statTarget is just amazing after I read Dunn 2011 paper. I need to get more familiar with your tool. In your paper, you mentioned that popular tool like MetaboAnalys missed this QC-SC, your starTarget is very powerful. Back to ASMS this year at Skyline user meeting video, there was a talk by Augus from Genetech about using Skyline, Labkey, Panronmoics for QC monitoring over the long term, you tool may just do that! What skills a data scientist need to master these days, R, python, ...?
Li