Using mod functions from htslib #117
Workflow file for this run
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: DNMTools distcheck (Ubuntu) | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: [ "master" ] | |
| pull_request: | |
| branches: [ "master" ] | |
| jobs: | |
| distcheck: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y \ | |
| libgsl-dev \ | |
| libcurl4-gnutls-dev \ | |
| libdeflate-dev \ | |
| liblzma-dev \ | |
| zlib1g-dev \ | |
| libbz2-dev | |
| - name: Build and install htslib (for recent version) | |
| run: | | |
| git clone --recursive https://github.com/samtools/htslib.git | |
| cd htslib | |
| make -j4 | |
| sudo make install prefix=/usr | |
| - name: Generate configure script | |
| run: ./autogen.sh | |
| - name: configure | |
| run: ./configure | |
| - name: Generate the source archive | |
| run: make dist | |
| - name: make distcheck | |
| run: make -j4 distcheck |