Using mod functions from htslib #118

	name: DNMTools build (Ubuntu)

	on:
	workflow_dispatch:
	push:
	branches: [ "master" ]
	pull_request:
	branches: [ "master" ]

	jobs:
	build-with-gcc:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	with:
	submodules: recursive
	- name: Install dependencies
	run: \|
	sudo apt-get update
	sudo apt-get install -y \
	libgsl-dev \
	libcurl4-gnutls-dev \
	libdeflate-dev \
	liblzma-dev \
	zlib1g-dev \
	libbz2-dev
	- name: Build and install htslib (for recent version)
	run: \|
	git clone --recursive https://github.com/samtools/htslib.git
	cd htslib
	make -j4
	sudo make install prefix=/usr
	- name: Generate configure script
	run: ./autogen.sh
	- name: Configure for GCC
	run: ./configure CXX="g++"
	- name: Build with g++
	run: make -j4
	- name: Test the g++ build
	run: make -j4 check
	build-with-clang:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	with:
	submodules: recursive
	- name: Install dependencies
	run: \|
	sudo apt-get update
	sudo apt-get install -y \
	libgsl-dev \
	libcurl4-gnutls-dev \
	libdeflate-dev \
	liblzma-dev \
	zlib1g-dev \
	libbz2-dev
	- name: Build and install htslib (for recent version)
	run: \|
	git clone --recursive https://github.com/samtools/htslib.git
	cd htslib
	make -j4
	sudo make install prefix=/usr
	- name: Generate configure script
	run: ./autogen.sh
	- name: Configure for Clang
	run: ./configure CXX="clang++"
	- name: Build with clang++
	run: make -j4
	- name: Test the clang++ build
	run: make -j4 check

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