Using mod functions from htslib #115

	name: DNMTools build (Ubuntu)

	on:
	workflow_dispatch:
	push:
	branches: [ "master" ]
	pull_request:
	branches: [ "master" ]

	jobs:
	build-with-gcc:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	with:
	submodules: recursive
	- name: Install dependencies
	run: sudo apt-get install -y libgsl-dev
	- name: Install HTSLib dependencies
	run: sudo apt-get install -y libcurl4-gnutls-dev libdeflate-dev liblzma-dev zlib1g-dev libbz2-dev
	- name: Build htslib
	run: \|
	git clone --recursive https://github.com/samtools/htslib.git && \
	cd htslib && \
	make -j4 && \
	sudo make install prefix=/usr
	- name: Generate configure script
	run: ./autogen.sh
	- name: Configure for GCC
	run: ./configure CXX="g++"
	- name: Build with g++
	run: make -j4
	- name: Test the g++ build
	run: \|
	ldd dnmtools
	sudo find / -name libhts.so\*
	sudo find / -name libhts.a
	./dnmtools
	build-with-clang:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	with:
	submodules: recursive
	- name: Install dependencies
	run: sudo apt-get install -y libhts-dev libgsl-dev
	- name: Generate configure script
	run: ./autogen.sh
	- name: Configure for Clang
	run: ./configure CXX="clang++"
	- name: Build with clang++
	run: make -j4
	- name: Test the clang++ build
	run: \|
	ldd dnmtools
	./dnmtools

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