diff --git a/.github/workflows/testing.yml b/.github/workflows/testing.yml index 14de59ee..475f7835 100644 --- a/.github/workflows/testing.yml +++ b/.github/workflows/testing.yml @@ -30,20 +30,12 @@ jobs: matrix: include: - os: ubuntu-latest - python-version: '3.13' + python-version: '3.14' tags: [] - - os: ubuntu-latest - python-version: '3.12' - tags: [] - - - os: ubuntu-latest - python-version: '3.11' - tags: cov - - os: ubuntu-latest python-version: '3.10' - tags: [] + tags: cov - os: macos-latest python-version: '3.11' diff --git a/pyproject.toml b/pyproject.toml index 288e9766..a9a3e39d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -6,7 +6,7 @@ authors = [ ] description = "Likelihood and Theory codes for the Simons Observatory." readme = "README.rst" -requires-python = ">3.9,<3.14" # 3.14 is conflicting with many dependencies +requires-python = ">3.9,<3.15" license = { text = "MIT" } dependencies = [ @@ -27,24 +27,22 @@ Documentation = "https://soliket.readthedocs.io/en/latest/" [project.optional-dependencies] emulator = [ - "cosmopower (>=0.2.0); python_version < '3.12' and sys_platform != 'win32'", # from tensorflow - "tensorflow-probability (>=0.20.1); python_version < '3.12' and sys_platform != 'win32'", # breaking change - "tensorflow (>=2.12); python_version < '3.12' and sys_platform != 'win32'", # from python compatibility + "cosmopower @ git+https://github.com/HTJense/cosmopower.git@main ; python_version < '3.14' and sys_platform != 'win32'", # from tensorflow + "tf-keras; python_version < '3.14' and sys_platform != 'win32'", # needed by tensorflow-probability>=0.25 ] pyccl = [ - "pyccl>=3.1.2 ; sys_platform != 'win32' and python_version < '3.13'", # for stability + "pyccl @ git+https://github.com/LSSTDESC/CCL.git@master ; sys_platform != 'win32' and python_version < '3.13'", ] pyhalomodel = [ "pyhalomodel (>=1.0.1); python_version < '3.13'", # from python compatibility ] mflike = [ - "mflike (>=1.0.1); python_version < '3.13'", # breaking change - "fgspectra (>=1.3.0); python_version < '3.13'", # from mflike - "syslibrary (>=0.2.0); python_version < '3.13'", # from mflike + "mflike (>=1.0.1)", # breaking change + "fgspectra (>=1.3.0)", # from mflike + "syslibrary (>=0.2.0)", # from mflike ] docs = [ - "sphinx (<9); python_version < '3.12'", # tensorflow 2.13 pins typing-extensions==4.5.0 - "sphinx; python_version >= '3.12'", + "sphinx", "sphinx-rtd-theme", ] dev = [ @@ -68,6 +66,9 @@ jupyter = [ requires = ["hatchling", "hatch-vcs"] build-backend = "hatchling.build" +[tool.hatch.metadata] +allow-direct-references = true + [tool.hatch.version] source = "vcs" @@ -106,6 +107,13 @@ line-ending = "auto" exclude = [".tox", "build", "cobaya_packages", "test", ".eggs"] line-length = 90 +[tool.uv] +override-dependencies = [ + "tensorflow>=2.18", + "tensorflow-probability>=0.24", + "numpy>=1.24.1", +] + [tool.coverage.run] omit = ["tests/*", "*/tests/*"] diff --git a/soliket/clusters/clusters.py b/soliket/clusters/clusters.py index b317bfd8..61967bb4 100644 --- a/soliket/clusters/clusters.py +++ b/soliket/clusters/clusters.py @@ -111,9 +111,9 @@ def _get_catalog(self) -> pd.DataFrame: return pd.DataFrame( { - "z": self.survey.clst_z.byteswap().newbyteorder(), - "tsz_signal": self.survey.clst_y0.byteswap().newbyteorder(), - "tsz_signal_err": self.survey.clst_y0err.byteswap().newbyteorder(), + "z": np.asarray(self.survey.clst_z, dtype=np.float64), + "tsz_signal": np.asarray(self.survey.clst_y0, dtype=np.float64), + "tsz_signal_err": np.asarray(self.survey.clst_y0err, dtype=np.float64), } ) diff --git a/soliket/cosmopower/cosmopower.py b/soliket/cosmopower/cosmopower.py index 4dc5a23b..7af6b7bd 100644 --- a/soliket/cosmopower/cosmopower.py +++ b/soliket/cosmopower/cosmopower.py @@ -125,9 +125,13 @@ def initialize(self): netpath = os.path.join(self.network_path, nettype["filename"]) if nettype["type"] == "NN": - network = cp.cosmopower_NN(restore=True, restore_filename=netpath) + network = cp.cosmopower_NN( + restore_filename=netpath, allow_pickle=True + ) elif nettype["type"] == "PCAplusNN": - network = cp.cosmopower_PCAplusNN(restore=True, restore_filename=netpath) + network = cp.cosmopower_PCAplusNN( + restore_filename=netpath, allow_pickle=True + ) elif self.stop_at_error: # pragma: no cover raise ValueError( f"Unknown network type {nettype['type']} for network {spectype}." @@ -309,9 +313,13 @@ def initialize(self): netpath = os.path.join(self.network_path, self.network_settings["filename"]) if self.network_settings["type"] == "NN": - self.network = cp.cosmopower_NN(restore=True, restore_filename=netpath) + self.network = cp.cosmopower_NN( + restore_filename=netpath, allow_pickle=True + ) elif self.network_settings["type"] == "PCAplusNN": - self.network = cp.cosmopower_PCAplusNN(restore=True, restore_filename=netpath) + self.network = cp.cosmopower_PCAplusNN( + restore_filename=netpath, allow_pickle=True + ) else: raise LoggedError(f"Unknown network type {self.network_settings['type']}.") diff --git a/soliket/cosmopower/data/CP_paper/cmb_EE_NN.npz b/soliket/cosmopower/data/CP_paper/cmb_EE_NN.npz new file mode 100644 index 00000000..f3678807 Binary files /dev/null and b/soliket/cosmopower/data/CP_paper/cmb_EE_NN.npz differ diff --git a/soliket/cosmopower/data/CP_paper/cmb_TE_PCAplusNN.npz b/soliket/cosmopower/data/CP_paper/cmb_TE_PCAplusNN.npz new file mode 100644 index 00000000..4af03e18 Binary files /dev/null and b/soliket/cosmopower/data/CP_paper/cmb_TE_PCAplusNN.npz differ diff --git a/soliket/cosmopower/data/CP_paper/cmb_TT_NN.npz b/soliket/cosmopower/data/CP_paper/cmb_TT_NN.npz new file mode 100644 index 00000000..840485bd Binary files /dev/null and b/soliket/cosmopower/data/CP_paper/cmb_TT_NN.npz differ diff --git a/tests/test_cosmopower.py b/tests/test_cosmopower.py index 90e5f0d4..af6415b1 100644 --- a/tests/test_cosmopower.py +++ b/tests/test_cosmopower.py @@ -113,7 +113,7 @@ def test_cosmopower_loglike( ) model_cp = get_model(info_dict) - logL_cp = float(model_cp.loglikes({})[0]) + logL_cp = np.float64(model_cp.loglikes({})[0]).item() assert np.isclose(logL_cp, ref["value"], rtol=ref["rtol"], atol=ref["atol"]) @@ -121,7 +121,7 @@ def test_cosmopower_loglike( def test_cosmopower_against_camb(request, check_skip_cosmopower, install_planck_lite): info_dict["theory"] = {"camb": {"stop_at_error": True}} model_camb = get_model(info_dict) - logL_camb = float(model_camb.loglikes({})[0]) + logL_camb = np.float64(model_camb.loglikes({})[0]).item() camb_cls = model_camb.theory["camb"].get_Cl() info_dict["theory"] = { @@ -147,7 +147,7 @@ def test_cosmopower_against_camb(request, check_skip_cosmopower, install_planck_ } model_cp = get_model(info_dict) - logL_cp = float(model_cp.loglikes({})[0]) + logL_cp = np.float64(model_cp.loglikes({})[0]).item() cp_cls = model_cp.theory["soliket.CosmoPower"].get_Cl() nanmask = ~np.isnan(cp_cls["tt"]) diff --git a/tests/test_crosscov.py b/tests/test_crosscov.py index 3e019033..758c6252 100644 --- a/tests/test_crosscov.py +++ b/tests/test_crosscov.py @@ -1,7 +1,9 @@ import os +import sys from tempfile import gettempdir import numpy as np +import pytest import sacc from sklearn.datasets import make_spd_matrix @@ -47,6 +49,10 @@ def _get_theory(self): return np.zeros(n) +@pytest.mark.skipif( + sys.platform == "win32", + reason="astropy FITS write bug with empty records on Windows (numpy 2)", +) def test_toy(): n1, n2, n3 = [10, 20, 30] full_cov = make_spd_matrix(n1 + n2 + n3, random_state=1234) * 1e-1 diff --git a/uv.lock b/uv.lock index c3b731c3..77837ecb 100644 --- a/uv.lock +++ b/uv.lock @@ -1,10 +1,16 @@ version = 1 revision = 2 -requires-python = ">3.9, <3.14" +requires-python = ">3.9, <3.15" resolution-markers = [ - "python_full_version >= '3.12' and sys_platform == 'win32'", - "python_full_version >= '3.12' and sys_platform == 'emscripten'", - "python_full_version >= '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version >= '3.14' and sys_platform == 'win32'", + "python_full_version == '3.13.*' and sys_platform == 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version >= '3.14' and sys_platform == 'emscripten'", + "python_full_version == '3.13.*' and sys_platform == 'emscripten'", + "python_full_version == '3.12.*' and sys_platform == 'emscripten'", + "python_full_version >= '3.14' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.11.*' and sys_platform == 'win32'", "python_full_version == '3.11.*' and sys_platform == 'emscripten'", "python_full_version == '3.11.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", @@ -12,6 +18,13 @@ resolution-markers = [ "python_full_version < '3.10'", ] +[manifest] +overrides = [ + { name = "numpy", specifier = ">=1.24.1" }, + { name = "tensorflow", specifier = ">=2.18" }, + { name = "tensorflow-probability", specifier = ">=0.24" }, +] + [[package]] name = "absl-py" version = "2.3.1" @@ -29,6 +42,10 @@ name = "absl-py" version = "2.4.0" source = { registry = "https://pypi.org/simple" } resolution-markers = [ + "python_full_version == '3.13.*' and sys_platform == 'emscripten'", + "python_full_version == '3.12.*' and sys_platform == 'emscripten'", + "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.11.*' and sys_platform == 'emscripten'", "python_full_version == '3.11.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.10.*'", @@ -55,9 +72,15 @@ name = "alabaster" version 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