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It looks like you get the machine to join Omni via a join config and trusted certificate chain but when you create a cluster Omni is removing the TrustedRootsConfig patch that was applied with the Omni connection config.

I would try downloading/booting an image with talos.config.inline set with the custom CA you need instead of applying it as a patch to a vanilla Talos image. You can see how to do it here. https://docs.siderolabs.com/talos/v1.11/reference/kernel#talos-config-early-and-talos-config-inline

Let us know if that works.

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