|
12 | 12 | - atac/PoissonVI.ipynb |
13 | 13 | - atac/scbasset_batch.ipynb |
14 | 14 | - atac/scbasset.ipynb |
| 15 | + - custom_dl/ann_collection.ipynb |
| 16 | + - custom_dl/lamin.ipynb |
| 17 | + - custom_dl/Tahoe100_mrVI_lamin.ipynb |
| 18 | + - custom_dl/tiledb.ipynb |
| 19 | + - cytometry/CytoVI_advanced_tutorial.ipynb |
| 20 | + - cytometry/CytoVI_batch_correction_tutorial.ipynb |
15 | 21 | - dev/data_tutorial.ipynb |
16 | 22 | - dev/model_user_guide.ipynb |
17 | 23 | - dev/module_user_guide.ipynb |
18 | | - - hub/Tahoe100.ipynb |
19 | 24 | - hub/cellxgene_census_model.ipynb |
20 | 25 | - hub/query_hlca_knn.ipynb |
21 | 26 | - hub/scvi_hub_intro_and_download.ipynb |
22 | 27 | - hub/scvi_hub_upload_and_large_files.ipynb |
| 28 | + - hub/Tahoe100.ipynb |
23 | 29 | - multimodal/cite_scrna_integration_w_totalVI.ipynb |
24 | 30 | - multimodal/MultiVI_tutorial.ipynb |
25 | 31 | - multimodal/scarches_scvi_tools.ipynb |
|
32 | 38 | - scrna/AutoZI_tutorial.ipynb |
33 | 39 | - scrna/cellassign_tutorial.ipynb |
34 | 40 | - scrna/contrastiveVI_tutorial.ipynb |
| 41 | + - scrna/decipher_tutorial.ipynb |
35 | 42 | - scrna/harmonization.ipynb |
36 | 43 | - scrna/linear_decoder.ipynb |
| 44 | + - scrna/MrVI_tutorial.ipynb |
37 | 45 | - scrna/scanvi_fix.ipynb |
38 | 46 | - scrna/scVI_DE_worm.ipynb |
39 | 47 | - scrna/seed_labeling.ipynb |
40 | | - - scrna/tabula_muris.ipynb |
41 | | - - scrna/MrVI_tutorial.ipynb |
42 | | - - scrna/decipher_tutorial.ipynb |
43 | 48 | - scrna/sysVI.ipynb |
| 49 | + - scrna/tabula_muris.ipynb |
| 50 | + - scrna/Tahoe100_mrVI.ipynb |
44 | 51 | - scrna/velovi.ipynb |
45 | 52 | - spatial/cell2location_lymph_node_spatial_tutorial.ipynb |
46 | 53 | - spatial/DestVI_tutorial.ipynb |
47 | 54 | - spatial/gimvi_tutorial.ipynb |
48 | | - - spatial/stereoscope_heart_LV_tutorial.ipynb |
49 | | - - spatial/tangram_scvi_tools.ipynb |
50 | 55 | - spatial/resolVI_tutorial.ipynb |
51 | 56 | - spatial/scVIVA_tutorial.ipynb |
| 57 | + - spatial/stereoscope_heart_LV_tutorial.ipynb |
| 58 | + - spatial/tangram_scvi_tools.ipynb |
52 | 59 | - use_cases/autotune_scvi.ipynb |
53 | 60 | - use_cases/interpretability.ipynb |
54 | 61 | - use_cases/minification.ipynb |
55 | 62 | - use_cases/multiGPU.ipynb |
56 | | - - use_cases/custom_dl/lamin.ipynb |
57 | | - - use_cases/custom_dl/tiledb.ipynb |
| 63 | + - use_cases/preprocessing.ipynb |
58 | 64 |
|
59 | 65 | python-version: |
60 | 66 | description: Python version |
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