From 4a6ea24d4d619c51ffa6b2d98c58d6f17ac8cf7b Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Fri, 31 Jul 2026 23:43:34 +0000
Subject: [PATCH] build(deps): bump noodles-csi from 0.57.0 to 0.58.0

Bumps [noodles-csi](https://github.com/zaeleus/noodles) from 0.57.0 to 0.58.0.
- [Commits](https://github.com/zaeleus/noodles/compare/noodles-csi-0.57.0...noodles-csi-0.58.0)

---
updated-dependencies:
- dependency-name: noodles-csi
  dependency-version: 0.58.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Cargo.lock                      | 105 ++++++++++++++++++++++++++++++--
 crates/escapepod-cli/Cargo.toml |   2 +-
 2 files changed, 101 insertions(+), 6 deletions(-)

diff --git a/Cargo.lock b/Cargo.lock
index bb7b730..894093a 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -364,7 +364,7 @@ version = "0.10.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "09ec2f926cc3060f09db9ebc5b52823d85268d24bb917e472c0c4bea35780a7d"
 dependencies = [
- "bit-vec",
+ "bit-vec 0.9.1",
 ]
 
 [[package]]
@@ -376,6 +376,16 @@ dependencies = [
  "serde",
 ]
 
+[[package]]
+name = "bit-vec"
+version = "0.10.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "5727b15fa97d4f4fee0a3b7c3d550ed0269f54329207b86388de918604e31269"
+dependencies = [
+ "borsh",
+ "serde",
+]
+
 [[package]]
 name = "bitflags"
 version = "2.13.0"
@@ -400,6 +410,30 @@ dependencies = [
  "objc2",
 ]
 
+[[package]]
+name = "borsh"
+version = "1.8.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "a88b7ea17d208c4193f2c1e6de3c35fe71f98c96982d5ced308bdcc749ff6e1f"
+dependencies = [
+ "borsh-derive",
+ "bytes",
+ "cfg_aliases",
+]
+
+[[package]]
+name = "borsh-derive"
+version = "1.8.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "d8f347189c62a579b8cd5f80714efa178f52e461dc2e6d701d264f5ff22e566c"
+dependencies = [
+ "once_cell",
+ "proc-macro-crate",
+ "proc-macro2",
+ "quote",
+ "syn 2.0.117",
+]
+
 [[package]]
 name = "bstr"
 version = "1.13.0"
@@ -884,7 +918,7 @@ dependencies = [
  "noodles-bam",
  "noodles-bgzf 0.49.0",
  "noodles-core",
- "noodles-csi",
+ "noodles-csi 0.58.0",
  "noodles-sam",
  "owo-colors",
  "parquet",
@@ -1706,7 +1740,7 @@ dependencies = [
  "memchr",
  "noodles-bgzf 0.48.0",
  "noodles-core",
- "noodles-csi",
+ "noodles-csi 0.57.0",
  "noodles-sam",
 ]
 
@@ -1749,13 +1783,26 @@ version = "0.57.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "56d2b47cd56d466c6b39d7d2d3f19905c786d5bbcf45c782af3c206129bb39b8"
 dependencies = [
- "bit-vec",
+ "bit-vec 0.9.1",
  "bstr",
  "indexmap",
  "noodles-bgzf 0.48.0",
  "noodles-core",
 ]
 
+[[package]]
+name = "noodles-csi"
+version = "0.58.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "b522467eb7ae4a226b05182069e895940beda9206a3f4da9dd9395613ec9e5a8"
+dependencies = [
+ "bit-vec 0.10.1",
+ "bstr",
+ "indexmap",
+ "noodles-bgzf 0.49.0",
+ "noodles-core",
+]
+
 [[package]]
 name = "noodles-sam"
 version = "0.86.0"
@@ -1769,7 +1816,7 @@ dependencies = [
  "memchr",
  "noodles-bgzf 0.48.0",
  "noodles-core",
- "noodles-csi",
+ "noodles-csi 0.57.0",
 ]
 
 [[package]]
@@ -2132,6 +2179,15 @@ dependencies = [
  "num-integer",
 ]
 
+[[package]]
+name = "proc-macro-crate"
+version = "3.5.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "e67ba7e9b2b56446f1d419b1d807906278ffa1a658a8a5d8a39dcb1f5a78614f"
+dependencies = [
+ "toml_edit",
+]
+
 [[package]]
 name = "proc-macro-error-attr2"
 version = "2.0.0"
@@ -2879,6 +2935,36 @@ dependencies = [
  "serde_json",
 ]
 
+[[package]]
+name = "toml_datetime"
+version = "1.1.1+spec-1.1.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "3165f65f62e28e0115a00b2ebdd37eb6f3b641855f9d636d3cd4103767159ad7"
+dependencies = [
+ "serde_core",
+]
+
+[[package]]
+name = "toml_edit"
+version = "0.25.13+spec-1.1.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "6975367e4d2ef766d86af01ffad14b622fecc8d4357a998fbc4deb6e9bacaf9b"
+dependencies = [
+ "indexmap",
+ "toml_datetime",
+ "toml_parser",
+ "winnow",
+]
+
+[[package]]
+name = "toml_parser"
+version = "1.1.3+spec-1.1.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "1d38ac1cf9b95face32296c0a3ede1fdc270627c9d9c02a7274dd6d960dc4d56"
+dependencies = [
+ "winnow",
+]
+
 [[package]]
 name = "tracing"
 version = "0.1.44"
@@ -3611,6 +3697,15 @@ version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "589f6da84c646204747d1270a2a5661ea66ed1cced2631d546fdfb155959f9ec"
 
+[[package]]
+name = "winnow"
+version = "1.0.4"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "23b97319f7b8343df12cc98938e5c3eb436064524c8d2b4e30a1d3a36eecdf81"
+dependencies = [
+ "memchr",
+]
+
 [[package]]
 name = "wit-bindgen"
 version = "0.51.0"
diff --git a/crates/escapepod-cli/Cargo.toml b/crates/escapepod-cli/Cargo.toml
index daadc16..15e794e 100644
--- a/crates/escapepod-cli/Cargo.toml
+++ b/crates/escapepod-cli/Cargo.toml
@@ -44,7 +44,7 @@ libc = { version = "0.2", optional = true }
 noodles-bam = { version = "0.91", optional = true }
 noodles-bgzf = { version = "0.49", optional = true }
 noodles-core = { version = "0.20", optional = true }
-noodles-csi = { version = "0.57", optional = true }
+noodles-csi = { version = "0.58", optional = true }
 noodles-sam = { version = "0.86", optional = true }
 owo-colors = { version = "4", optional = true }
 parquet = { workspace = true, optional = true }