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Multi-branch loop energy calculation can be improved #2

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Multi-branch loop energy calculation can be improved#2
@reisalex

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@reisalex
reisalex
opened on May 31, 2018

MBLs should include flush and mismatch-mediated coaxial stacking, as well as terminal mismatches, not just 5' and 3' dangles (eloop.py).

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