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Merge pull request #82 from rapidsai/branch-21.08
[RELEASE] cucim v21.08
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‎.github/ISSUE_TEMPLATE/bug_report.md‎

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name: Bug report
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about: Create a bug report to help us improve ___PROJECT___
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about: Create a bug report to help us improve cuCIM
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title: "[BUG]"
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labels: "? - Needs Triage, bug"
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assignees: ''
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**Environment details (please complete the following information):**
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- Environment location: [Bare-metal, Docker, Cloud(specify cloud provider)]
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- Method of ___PROJECT___ install: [conda, Docker, or from source]
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- Method of cuCIM install: [conda, Docker, or from source]
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- If method of install is [Docker], provide `docker pull` & `docker run` commands used
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‎.github/ISSUE_TEMPLATE/feature_request.md‎

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name: Feature request
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about: Suggest an idea for ___PROJECT___
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about: Suggest an idea for cuCIM
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title: "[FEA]"
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labels: "? - Needs Triage, feature request"
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assignees: ''
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**Is your feature request related to a problem? Please describe.**
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A clear and concise description of what the problem is. Ex. I wish I could use ___PROJECT___ to do [...]
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A clear and concise description of what the problem is. Ex. I wish I could use cuCIM to do [...]
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**Describe the solution you'd like**
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A clear and concise description of what you want to happen.

‎.github/ISSUE_TEMPLATE/submit-question.md‎

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name: Submit question
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about: Ask a general question about ___PROJECT___
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about: Ask a general question about cuCIM
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title: "[QST]"
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labels: "? - Needs Triage, question"
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assignees: ''

‎.github/PULL_REQUEST_TEMPLATE.md‎

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<!--
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Thank you for contributing to ___PROJECT___ :)
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Thank you for contributing to cuCIM :)
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Here are some guidelines to help the review process go smoothly.
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‎.gitignore‎

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# Conda folders
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# Large Images
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*.svs

‎.pre-commit-config.yaml‎

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# To install the git pre-commit hook run:
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# pre-commit install
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# To update the pre-commit hooks run:
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# pre-commit install-hooks
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exclude: '^(\.tox|ci/templates|\.bumpversion\.cfg)(/|$)'
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repos:
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- repo: https://github.com/pre-commit/pre-commit-hooks
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rev: master
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hooks:
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- id: trailing-whitespace
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- id: end-of-file-fixer
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- id: debug-statements
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- repo: https://github.com/pycqa/isort
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rev: 5.6.4
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hooks:
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- id: isort
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files: ^python/cucim/src/.*
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args: ["--settings-path=python/cucim/setup.cfg"]
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- repo: https://gitlab.com/pycqa/flake8
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rev: master
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hooks:
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- id: flake8
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files: ^python/cucim/.*

‎3rdparty/LICENSE.gputil‎

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MIT License
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Copyright (c) 2017 anderskm
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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The above copyright notice and this permission notice shall be included in all
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copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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SOFTWARE.

‎3rdparty/LICENSE.psutil‎

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BSD 3-Clause License
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Copyright (c) 2009, Jay Loden, Dave Daeschler, Giampaolo Rodola'
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All rights reserved.
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Redistribution and use in source and binary forms, with or without modification,
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are permitted provided that the following conditions are met:
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* Redistributions of source code must retain the above copyright notice, this
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list of conditions and the following disclaimer.
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* Redistributions in binary form must reproduce the above copyright notice,
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this list of conditions and the following disclaimer in the documentation
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and/or other materials provided with the distribution.
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* Neither the name of the psutil authors nor the names of its contributors
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may be used to endorse or promote products derived from this software without
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specific prior written permission.
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THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
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ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
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WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
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DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
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ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
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(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
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LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
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ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
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(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
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SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

‎3rdparty/LICENSE.pytest-lazy-fixture‎

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The MIT License (MIT)
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Copyright (c) 2016 Marsel Zaripov
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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The above copyright notice and this permission notice shall be included in
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all copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
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THE SOFTWARE.

‎CHANGELOG.md‎

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# cuCIM 21.08.00 (4 Aug 2021)
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## 🐛 Bug Fixes
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- Remove int-type bug on Windows in skimage.measure.label ([#72](https://github.com/rapidsai/cucim/pull/72)) [@grlee77](https://github.com/grlee77)
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- Fix missing array interface for associated_image() ([#65](https://github.com/rapidsai/cucim/pull/65)) [@gigony](https://github.com/gigony)
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- Handle zero-padding version string ([#59](https://github.com/rapidsai/cucim/pull/59)) [@gigony](https://github.com/gigony)
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- Remove invalid conda environment activation ([#58](https://github.com/rapidsai/cucim/pull/58)) [@ajschmidt8](https://github.com/ajschmidt8)
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## 📖 Documentation
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- Fix a typo in cache document ([#66](https://github.com/rapidsai/cucim/pull/66)) [@gigony](https://github.com/gigony)
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## 🚀 New Features
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- Pin `isort` hook to 5.6.4 ([#73](https://github.com/rapidsai/cucim/pull/73)) [@charlesbluca](https://github.com/charlesbluca)
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- Add skimage.morphology.thin ([#27](https://github.com/rapidsai/cucim/pull/27)) [@grlee77](https://github.com/grlee77)
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## 🛠️ Improvements
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- Add SciPy 2021 to README ([#79](https://github.com/rapidsai/cucim/pull/79)) [@jakirkham](https://github.com/jakirkham)
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- Use more descriptive ElementwiseKernel names in cucim.skimage ([#75](https://github.com/rapidsai/cucim/pull/75)) [@grlee77](https://github.com/grlee77)
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- Add initial Python unit/performance tests for TIFF loader module ([#62](https://github.com/rapidsai/cucim/pull/62)) [@gigony](https://github.com/gigony)
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- Fix `21.08` forward-merge conflicts ([#57](https://github.com/rapidsai/cucim/pull/57)) [@ajschmidt8](https://github.com/ajschmidt8)
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# cuCIM 21.06.00 (9 Jun 2021)
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## 🐛 Bug Fixes

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