- 👋 Hi, I’m @rLannes, a bioinformatician scientist working on splicing, PhD in Evolution, and former Research Fellow working on Multiple Myeloma and single-cell data integration.
- 👀 I’m interested in Python, Rust, and data structure. I did catch the programming bug. Data Science, computational biology, single-cell analyses, and data visualization (matplotlib lover)
- 🌱 I build lightweight, performant tools for genomics data processing in Python and Rust.
- 💞️ I’m looking to collaborate on ...
- 📫 How to reach me ...
Popular repositories Loading
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pycoverplot
pycoverplot PublicPlot read coverage from BAM files over genomic regions, backend in rust (under 4s, 12 bam files over 2.2MB!). Built with RNA-seq in mind but compatible with any aligned data in BAM format.
Python 3
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CigarParser
CigarParser PublicA Rust librairy to parse Cigar string and in particular identify junction position.
Rust 1
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BAMstrandSpecifier
BAMstrandSpecifier Publicdetermine the strand of origin of a sequencing fragment based on the librairy layout.
Rust 1
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smart_blast_allvsall
smart_blast_allvsall Publicfast all against all blast for homology detection
Python
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