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This repository was archived by the owner on Jan 23, 2025. It is now read-only.
This repository was archived by the owner on Jan 23, 2025. It is now read-only.

design testing procedures #10

@paularstrpo

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@paularstrpo

Design procedures for testing the analysis workflow and comparing it to the edgeR/limma/Glimma R implementation so that we can ensure reproducibility, test performance, features, parity, upgrades, etc.

This could possibly include things such as:

  • reproducing DGE analysis from published studies in both the R workflows and the python workflows.
  • performing DGE analysis on publicly available datasets such as human cell line data, public data from GEO, etc, as long as the datasets are openly available to use.

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