Hi,
I download the vignette data muo_data.rds
load the muo_data.rds as the object seurat_obj and running the vignette
here is my code
seurat_obj <- infer_grn(
seurat_obj,
peak_to_gene_method = 'Signac',
genes = patterning_genes$symbol ,# HVG with tf annotation
parallel = T ,
group.by =orig.ident # the orig.ident of muo_data.rds
)
the error message is Warning: Fitting model failed for xxxxxx until all genes have failed.
HOWEVER when i deprecated the group.by parameter like this:
seurat_obj <- infer_grn(
seurat_obj,
peak_to_gene_method = 'Signac',
genes = patterning_genes$symbol ,# HVG with tf annotation
parallel = T ,
)
No such error occured.
I appreciated the pando packages very much.
THank you for your help !