OpenProphetDB

All

19 repositories

biomedgps-explainer
Public
A comprehensive network medicine-based drug repurposing and visualization toolkit for biomedical research.
knowledge-graph drug-repurposing network-analysis explainable-ai rare-disease graph-neural-network network-medicine complex-disease
Python
•
MIT License
•0•1•0•0•Updated Oct 3, 2025Oct 3, 2025
prophetdb.org
Public
A website for OpenProphetDB community.
drug-repurposing open-source-community official-website omics-data disease-mechanisms gnn-model
MIT License
•1•0•0•0•Updated Sep 26, 2025Sep 26, 2025
biomedgps
Public
A knowledge graph system with graph neural network for drug repurposing and disease mechanism.
knowledge-graph drug-discovery drug-repurposing graph-embedding disease-prediction graph-neural-network disease-mechanisms
Rust
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GNU Affero General Public License v3.0
•2•18•4•0•Updated Sep 12, 2025Sep 12, 2025
biomedgps-docs
Public
A doc site for all biomedgps subsystems.
HTML
•0•0•0•0•Updated Sep 7, 2025Sep 7, 2025
biomedgps-data
Public
Biomedical knowledge graph builder.
knowledge-graph drug-repurposing rare-disease graph-neural-network biomedical-research
Jupyter Notebook
•2•6•8•1•Updated Sep 7, 2025Sep 7, 2025
prophet-studio
Public
A labeling tool for building your own domain knowledgebase from biomedical publications. Let us read the papers routinely and build our own domain knowledgebase together.
python rust publications knowledge-graph nlp-machine-learning knowledge-management labeling-tool
Python
•0•8•4•0•Updated Sep 7, 2025Sep 7, 2025
biominer-docs
Public
A doc site for all biominer subsystems.
0•0•0•0•Updated Aug 19, 2025Aug 19, 2025
biominer-llm
Public
Python
•0•0•1•0•Updated Aug 19, 2025Aug 19, 2025
dgl-ke
Public
High performance, easy-to-use, and scalable package for learning large-scale knowledge graph embeddings.
Python
•
Apache License 2.0
•198•1•0•0•Updated Mar 29, 2025Mar 29, 2025
graph-builder
Public
A Graph Builder for BioMedGPS Project
Python
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MIT License
•1•0•0•0•Updated Mar 3, 2025Mar 3, 2025
paper-downloader
Public
A downloader for downloading papers and fetching related metadata for labeling.
Python
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MIT License
•0•0•0•0•Updated Jan 21, 2025Jan 21, 2025
.github
Public
0•0•0•0•Updated Oct 29, 2024Oct 29, 2024
biominer-components
Public
UI Components for BioMiner
TypeScript
•0•1•0•0•Updated Aug 10, 2024Aug 10, 2024
ontology-matcher
Public
It's a simple ontology matcher for building a set of cleaned ontologies. [For BioMedGPS project]
Python
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MIT License
•0•1•0•0•Updated Jul 26, 2024Jul 26, 2024
postgresml
Public
The GPU-powered AI application database. Get your app to market faster using the simplicity of SQL and the latest NLP, ML + LLM models.
Rust
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MIT License
•342•0•0•0•Updated Jul 10, 2024Jul 10, 2024
biomedical-knowledgebases
Public
A collection of biomedical knowledgebases, ontologies, and datasets.
collection awsome-list
0•3•0•0•Updated Apr 16, 2024Apr 16, 2024
knowledge-graph-editor
Public
This extension is designed for synchronizing findings/knowledges into a biomedgps instance. The findings/knowledges are annotated from literature and other sources using Label Studio.
JavaScript
•0•1•0•0•Updated Nov 25, 2023Nov 25, 2023
label-studio
Public
Label Studio is a multi-type data labeling and annotation tool with standardized output format
Python
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Apache License 2.0
•3.1k•0•0•0•Updated Oct 15, 2023Oct 15, 2023
label-studio-frontend
Public
Data labeling react app that is backend agnostic and can be embedded into your applications — distributed as an NPM package
JavaScript
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Apache License 2.0
•324•0•0•0•Updated Aug 13, 2023Aug 13, 2023