Repositories list

• ome-zarr-resources

  Public
  Status dashboard for OME-Zarr resources

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 1, 2026Oct 1, 2026

• oztest

  Public
  WIP: Conformance test cases and tools for OME-Zarr

  testopenmicroscopyngff+ 1

  testopenmicroscopyngffome-zarr

  Python

  •00 forks•44 stars•44 issues•11 pull request•Updated Oct 1, 2026Oct 1, 2026

• RDM4mic

  Public
  RDM4mic working group - research data management for microscopy data

  data-managementmicroscopy

  data-managementmicroscopy

  Creative Commons Attribution 4.0 International

  •11 fork•99 stars•11 issue•00 pull requests•Updated Sep 30, 2026Sep 30, 2026

• gide_network_viz

  Public
  A network viz of the foundingGIDE metadata

  HTML

  •11 fork•00 stars•00 issues•00 pull requests•Updated Sep 24, 2026Sep 24, 2026

• fit-for-omero_ansible-playbook

  Public
  Ansible playbook examples to install OMERO used during the Fit for OMERO workshop

  Jinja

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Sep 24, 2026Sep 24, 2026

• ome-zarr-acknowledgments

  Public
  People that have contributed to OME-Zarr at some point

  yamlacknowledgmentsngff+ 1

  yamlacknowledgmentsngffome-zarr

  HTML

  •1111 forks•33 stars•1212 issues•00 pull requests•Updated Sep 10, 2026Sep 10, 2026

• RDM4mic.github.io

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Aug 28, 2026Aug 28, 2026

• omero-ontop-mappings

  Public
  ONTOP module for querying OMERO with SPARQL

  Shell

  •

  BSD 3-Clause "New" or "Revised" License

  •44 forks•22 stars•1717 issues•22 pull requests•Updated Jul 31, 2026Jul 31, 2026

• omero_fileserver-import

  Public
  Script to import images from fileserver mounted on an OMERO server

  omeroomero-webomero-import+ 1

  omeroomero-webomero-importomero-scripts

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •22 forks•88 stars•11 issue•11 pull request•Updated Jul 16, 2026Jul 16, 2026

• omero-registry

  Public
  A public registry of OMERO instances. (DRAFT)

  00 forks•00 stars•00 issues•00 pull requests•Updated Jul 2, 2026Jul 2, 2026

• sparql-examples

  Public
  A set of SPARQL examples that are used in different GerBI resources

  HTML

  •

  Other

  •3636 forks•11 star•00 issues•00 pull requests•Updated May 28, 2026May 28, 2026

• idr_study_crates

  Public
  RO-Crates for IDR metadata in the GIDE project

  Python

  •00 forks•11 star•11 issue•00 pull requests•Updated Apr 22, 2026Apr 22, 2026

• nfdi-formats

  Public
  Python

  •

  Creative Commons Zero v1.0 Universal

  •11 fork•00 stars•22 issues•00 pull requests•Updated Apr 22, 2026Apr 22, 2026

• gide-sparnatural

  Public
  Sparnatural on triples from IDR and other bioimagin resources

  CSS

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 13, 2026Mar 13, 2026

• .teams

  Public
  Organizational teams managed via a YAML file

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•11 star•00 issues•11 pull request•Updated Feb 27, 2026Feb 27, 2026

• omero-rdf

  Public
  A plugin for exporting RDF from OMERO

  nfdi4bioimage

  nfdi4bioimage

  Python

  •

  GNU General Public License v2.0

  •1313 forks•1616 stars•3030 issues•77 pull requests•Updated Feb 27, 2026Feb 27, 2026

• nixos-dev-omero

  Public
  NixOs configutation and HowTo for an out of the box setup to contribute to OMERO.web and plugins

  Nix

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 5, 2026Feb 5, 2026

• omero-autotag

  Public
  Extensions to OMERO.web to enhance tagging

  omero-web

  omero-web

  JavaScript

  •

  GNU Affero General Public License v3.0

  •44 forks•00 stars•33 issues•11 pull request•Updated Jan 26, 2026Jan 26, 2026

• bioimageaipub

  Public
  BioimageAIpub: a toolbox for AI-ready bioimaging data publishing

  Python

  •

  Apache License 2.0

  •22 forks•33 stars•11 issue•11 pull request•Updated Dec 17, 2025Dec 17, 2025

• incubator

  Public
  A place for issues to grow

  00 forks•22 stars•5959 issues•00 pull requests•Updated Dec 8, 2025Dec 8, 2025

• omero-tagsearch

  Public
  Extensions to OMERO.web to enhance image/dataset/project filtering from tags.

  omero-web

  omero-web

  HTML

  •

  GNU Affero General Public License v3.0

  •33 forks•00 stars•55 issues•22 pull requests•Updated Dec 4, 2025Dec 4, 2025

• omero_macro-extensions

  Public
  Java

  •

  GNU General Public License v2.0

  •55 forks•00 stars•00 issues•00 pull requests•Updated Dec 4, 2025Dec 4, 2025

• .github

  Public
  00 forks•11 star•00 issues•00 pull requests•Updated Nov 25, 2025Nov 25, 2025

• ome-zarr-ideas

  Public
  Ideas for supporting OME / OME-Zarr in the context of GerBI

  ideasngffome-zarr

  ideasngffome-zarr

  00 forks•11 star•103103 issues•00 pull requests•Updated Sep 16, 2025Sep 16, 2025

• idr_metadata_model

  Public
  Python

  •

  Apache License 2.0

  •11 fork•22 stars•00 issues•00 pull requests•Updated Jul 31, 2025Jul 31, 2025

• jupyterhub-deploy-docker

  Public
  Reference deployment of JupyterHub with docker

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •382382 forks•00 stars•00 issues•00 pull requests•Updated Apr 1, 2025Apr 1, 2025

• fiji_omero_workflows

  Public
  ImageJ/Fiji macros using OMERO

  ImageJ Macro

  •00 forks•33 stars•00 issues•00 pull requests•Updated Mar 28, 2025Mar 28, 2025

• omero-scripts

  Public
  Core OMERO Scripts

  Python

  •3232 forks•22 stars•00 issues•00 pull requests•Updated Dec 17, 2024Dec 17, 2024

• omero-rdf-wikidata

  Public
  Wikidata extension for omero-rdf

  Python

  •

  GNU General Public License v2.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Dec 11, 2024Dec 11, 2024

• ome-owl

  Public
  Mirror of https://gitlab.com/openmicroscopy/incubator/ome-owl

  Java

  •00 forks•11 star•11 issue•00 pull requests•Updated Dec 11, 2024Dec 11, 2024