reporting of coding variants with rna support

[kcotto-shennon]

I recently ran a case and noticed this in the report:

Total number of somatic variants: 188
Somatic variants with predicted coding effects: 14
Somatic variants with predicted coding effects and RNA support: 18
Somatic variants with predicted coding effects, RNA support and predicted MHC ligands: 6

Based on the logic above, I would expect "Somatic variants with predicted coding effects and RNA support" to always be a subset of "Somatic variants with predicted coding effects". However, when I look at the logic in the code, it seems like that is not the case. Am I missing something here?

counts_dict = {}
counts_dict['num_total_variants'] = len(self.isovar_results)
counts_dict['num_coding_effect_variants'] = \
     sum([v['is_coding_nonsynonymous'] for v in variant_properties])
counts_dict['num_variants_with_rna_support'] = \
     sum([v['rna_support'] for v in variant_properties])