From 4a98fa783aaf3a9c96d6477d4a416d1ab0e0597d Mon Sep 17 00:00:00 2001
From: aymanhab <ahabib@stanford.edu>
Date: Tue, 7 Mar 2023 11:57:22 -0800
Subject: [PATCH] Add docker file to build opensim-java with moco

---
 .../opensim-java/dockerfile-ubuntu-with-moco  | 53 +++++++++++++++++++
 1 file changed, 53 insertions(+)
 create mode 100644 opensim-core/opensim-java/dockerfile-ubuntu-with-moco

diff --git a/opensim-core/opensim-java/dockerfile-ubuntu-with-moco b/opensim-core/opensim-java/dockerfile-ubuntu-with-moco
new file mode 100644
index 0000000..44122b7
--- /dev/null
+++ b/opensim-core/opensim-java/dockerfile-ubuntu-with-moco
@@ -0,0 +1,53 @@
+FROM stanfordnmbl/opensim-deps:4.4-with-moco
+
+LABEL maintainer="Ayman Habib"
+
+# The following sets timezone to avoid prompt for timezone when installing packages
+ENV TZ=America/Los_Angeles
+RUN ln -snf /usr/share/zoneinfo/$TZ /etc/localtime && echo $TZ > /etc/timezone
+RUN apt-get update && DEBIAN_FRONTEND=noninteractive && apt-get --yes install \
+        libpcre3 libpcre3-dev flex bison
+
+# install openjdk8
+RUN apt-get install -y openjdk-8-jdk \
+	&& apt-get install -y ant \
+	&& apt-get clean \
+	&& rm -rf /var/lib/apt/lists/* \
+	&& rm -rf /var/cache/oracle-jdk8-installer;
+
+# Fix certificate issue https://bugs.launchpad.net/ubuntu/+source/ca-certificates-java/+bug/983302
+RUN apt-get update \
+	&& apt-get install -y ca-certificates-java \
+	&& apt-get clean \
+	&& update-ca-certificates -f \
+	&& rm -rf /var/lib/apt/lists/* \
+	&& rm -rf /var/cache/oracle-jdk8-installer;
+
+# Setup JAVA_HOME, this is useful for docker commandline
+ENV JAVA_HOME /usr/lib/jvm/java-8-openjdk-amd64/
+RUN export JAVA_HOME
+
+#install SWIG
+RUN mkdir ~/swig-source && cd ~/swig-source \
+        && wget https://github.com/swig/swig/archive/refs/tags/rel-4.0.2.tar.gz \
+        && tar xzf rel-4.0.2.tar.gz \
+        && cd swig-rel-4.0.2 \
+        && sh autogen.sh \
+        && ./configure --prefix=$HOME/swig --disable-ccache \
+        && make \
+        && make -j4 install \
+        && rm -rf ~/swig-source
+
+RUN mkdir opensim_build \
+       && cd opensim_build \
+       && cmake ../opensim-core \
+        -DSWIG_DIR=~/swig/share/swig -DSWIG_EXECUTABLE=~/swig/bin/swig -DBUILD_JAVA_WRAPPING=ON -DBUILD_TESTING=OFF \
+        -DCMAKE_INSTALL_PREFIX=$OPENSIM_INSTALL -DOPENSIM_DEPENDENCIES_DIR=$OPENSIM_DEPENDENCIES_HOME \
+        -DOPENSIM_C3D_PARSER=ezc3d -DSWIG_DOXYGEN=OFF -DOPENSIM_WITH_CASADI=ON -DOPENSIM_WITH_TROPTER=ON \
+       && make -j8 \
+       && make install \
+       && rm -rf ../opensim_build \
+       && rm -rf ~/opensim_dependencies_install \
+       && rm -rf $HOME/swig
+
+# image stored at stanfordnmbl/opensim-java