diff --git a/src/control_methods/negative_normal/config.vsh.yaml b/src/control_methods/negative_normal/config.vsh.yaml index e504cf77..73c2559f 100644 --- a/src/control_methods/negative_normal/config.vsh.yaml +++ b/src/control_methods/negative_normal/config.vsh.yaml @@ -13,7 +13,7 @@ resources: engines: - type: docker - image: openproblems/base_r:1.0.0 + image: openproblems/base_r:1 runners: - type: executable diff --git a/src/control_methods/negative_shuffle/config.vsh.yaml b/src/control_methods/negative_shuffle/config.vsh.yaml index bbebcd4f..8b50ccfb 100644 --- a/src/control_methods/negative_shuffle/config.vsh.yaml +++ b/src/control_methods/negative_shuffle/config.vsh.yaml @@ -12,7 +12,7 @@ resources: engines: - type: docker - image: openproblems/base_r:1.0.0 + image: openproblems/base_r:1 runners: - type: executable diff --git a/src/control_methods/positive/config.vsh.yaml b/src/control_methods/positive/config.vsh.yaml index 42a42272..b93ccc7c 100644 --- a/src/control_methods/positive/config.vsh.yaml +++ b/src/control_methods/positive/config.vsh.yaml @@ -18,7 +18,7 @@ resources: engines: - type: docker - image: openproblems/base_r:1.0.0 + image: openproblems/base_r:1 setup: - type: r cran: SRTsim diff --git a/src/methods/scdesign2/config.vsh.yaml b/src/methods/scdesign2/config.vsh.yaml index ac7a562a..99b02ff2 100644 --- a/src/methods/scdesign2/config.vsh.yaml +++ b/src/methods/scdesign2/config.vsh.yaml @@ -19,7 +19,7 @@ resources: engines: - type: docker - image: openproblems/base_r:1.0.0 + image: openproblems/base_r:1 setup: - type: apt packages: [r-bioc-singlecellexperiment, git] diff --git a/src/methods/scdesign3_nb/config.vsh.yaml b/src/methods/scdesign3_nb/config.vsh.yaml index 61954fda..965d7feb 100644 --- a/src/methods/scdesign3_nb/config.vsh.yaml +++ b/src/methods/scdesign3_nb/config.vsh.yaml @@ -37,7 +37,7 @@ resources: engines: - type: docker - image: openproblems/base_r:1.0.0 + image: openproblems/base_r:1 setup: - type: r github: diff --git a/src/methods/scdesign3_poisson/config.vsh.yaml b/src/methods/scdesign3_poisson/config.vsh.yaml index 3ba62578..3b3ec99c 100644 --- a/src/methods/scdesign3_poisson/config.vsh.yaml +++ b/src/methods/scdesign3_poisson/config.vsh.yaml @@ -37,7 +37,7 @@ resources: engines: - type: docker - image: openproblems/base_r:1.0.0 + image: openproblems/base_r:1 setup: - type: apt packages: [r-bioc-singlecellexperiment, git] diff --git a/src/methods/sparsim/config.vsh.yaml b/src/methods/sparsim/config.vsh.yaml index 8e6d0fc6..0c4d4e05 100644 --- a/src/methods/sparsim/config.vsh.yaml +++ b/src/methods/sparsim/config.vsh.yaml @@ -18,7 +18,7 @@ resources: engines: - type: docker - image: openproblems/base_r:1.0.0 + image: openproblems/base_r:1 setup: - type: apt packages: [git, r-bioc-singlecellexperiment] diff --git a/src/methods/splatter/config.vsh.yaml b/src/methods/splatter/config.vsh.yaml index aaf6c6a3..16abce03 100644 --- a/src/methods/splatter/config.vsh.yaml +++ b/src/methods/splatter/config.vsh.yaml @@ -17,7 +17,7 @@ resources: engines: - type: docker - image: openproblems/base_r:1.0.0 + image: openproblems/base_r:1 setup: - type: apt packages: r-bioc-splatter diff --git a/src/methods/srtsim/config.vsh.yaml b/src/methods/srtsim/config.vsh.yaml index da146a17..9864e83a 100644 --- a/src/methods/srtsim/config.vsh.yaml +++ b/src/methods/srtsim/config.vsh.yaml @@ -18,7 +18,7 @@ resources: engines: - type: docker - image: openproblems/base_r:1.0.0 + image: openproblems/base_r:1 setup: - type: r cran: SRTsim diff --git a/src/methods/symsim/config.vsh.yaml b/src/methods/symsim/config.vsh.yaml index bb389120..defab5f2 100644 --- a/src/methods/symsim/config.vsh.yaml +++ b/src/methods/symsim/config.vsh.yaml @@ -18,7 +18,7 @@ resources: engines: - type: docker - image: openproblems/base_r:1.0.0 + image: openproblems/base_r:1 setup: - type: r bioc: SingleCellExperiment diff --git a/src/methods/zinbwave/config.vsh.yaml b/src/methods/zinbwave/config.vsh.yaml index 1b882d01..58152866 100644 --- a/src/methods/zinbwave/config.vsh.yaml +++ b/src/methods/zinbwave/config.vsh.yaml @@ -18,7 +18,7 @@ resources: engines: - type: docker - image: openproblems/base_r:1.0.0 + image: openproblems/base_r:1 setup: - type: apt packages: [r-bioc-splatter, r-bioc-zinbwave, r-bioc-singlecellexperiment] diff --git a/src/metrics/downstream/config.vsh.yaml b/src/metrics/downstream/config.vsh.yaml index a6725231..996d3faf 100644 --- a/src/metrics/downstream/config.vsh.yaml +++ b/src/metrics/downstream/config.vsh.yaml @@ -110,7 +110,7 @@ resources: engines: - type: docker - image: openproblems/base_r:1.0.0 + image: openproblems/base_r:1 setup: - type: r bioc: diff --git a/src/metrics/ks_statistic_gene_cell/config.vsh.yaml b/src/metrics/ks_statistic_gene_cell/config.vsh.yaml index 2c0a78fa..6a3e475a 100644 --- a/src/metrics/ks_statistic_gene_cell/config.vsh.yaml +++ b/src/metrics/ks_statistic_gene_cell/config.vsh.yaml @@ -296,7 +296,7 @@ resources: engines: - type: docker - image: openproblems/base_r:1.0.0 + image: openproblems/base_r:1 setup: - type: r bioc: [edger, sparseMatrixStats] diff --git a/src/metrics/ks_statistic_sc_features/config.vsh.yaml b/src/metrics/ks_statistic_sc_features/config.vsh.yaml index 1b788093..89980fe3 100644 --- a/src/metrics/ks_statistic_sc_features/config.vsh.yaml +++ b/src/metrics/ks_statistic_sc_features/config.vsh.yaml @@ -57,7 +57,7 @@ resources: engines: - type: docker - image: openproblems/base_r:1.0.0 + image: openproblems/base_r:1 setup: - type: r bioc: diff --git a/src/metrics/ks_statistic_spatial/config.vsh.yaml b/src/metrics/ks_statistic_spatial/config.vsh.yaml index d685036a..af740dab 100644 --- a/src/metrics/ks_statistic_spatial/config.vsh.yaml +++ b/src/metrics/ks_statistic_spatial/config.vsh.yaml @@ -75,7 +75,7 @@ resources: engines: - type: docker - image: openproblems/base_python:1.0.0 + image: openproblems/base_python:1 setup: - type: python packages: diff --git a/src/process_datasets/convert/config.vsh.yaml b/src/process_datasets/convert/config.vsh.yaml index df4b11a8..79795693 100644 --- a/src/process_datasets/convert/config.vsh.yaml +++ b/src/process_datasets/convert/config.vsh.yaml @@ -10,7 +10,7 @@ resources: engines: - type: docker - image: openproblems/base_r:1.0.0 + image: openproblems/base_r:1 setup: - type: r bioc: [SingleCellExperiment] diff --git a/src/process_datasets/generate_sim_spatialcluster/config.vsh.yaml b/src/process_datasets/generate_sim_spatialcluster/config.vsh.yaml index d24a47d0..f13ffbaa 100644 --- a/src/process_datasets/generate_sim_spatialcluster/config.vsh.yaml +++ b/src/process_datasets/generate_sim_spatialcluster/config.vsh.yaml @@ -35,7 +35,7 @@ test_resources: engines: - type: docker - image: openproblems/base_r:1.0.0 + image: openproblems/base_r:1 setup: - type: r bioc: diff --git a/src/process_datasets/precompute_downstream/config.vsh.yaml b/src/process_datasets/precompute_downstream/config.vsh.yaml index 6ef0dc4c..d457b67c 100644 --- a/src/process_datasets/precompute_downstream/config.vsh.yaml +++ b/src/process_datasets/precompute_downstream/config.vsh.yaml @@ -31,7 +31,7 @@ test_resources: engines: - type: docker - image: openproblems/base_r:1.0.0 + image: openproblems/base_r:1 setup: - type: r github: [xzhoulab/SPARK, stevexniu/spots] diff --git a/src/process_datasets/sc_features/config.vsh.yaml b/src/process_datasets/sc_features/config.vsh.yaml index 1524f7cd..036d63b7 100644 --- a/src/process_datasets/sc_features/config.vsh.yaml +++ b/src/process_datasets/sc_features/config.vsh.yaml @@ -30,7 +30,7 @@ test_resources: engines: - type: docker - image: openproblems/base_r:1.0.0 + image: openproblems/base_r:1 setup: - type: r github: