diff --git a/modules/nf-core/trgt/genotype/environment.yml b/modules/nf-core/trgt/genotype/environment.yml
index 8174b1f6505c..5ff336d40646 100644
--- a/modules/nf-core/trgt/genotype/environment.yml
+++ b/modules/nf-core/trgt/genotype/environment.yml
@@ -4,4 +4,4 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - bioconda::trgt=4.0.0
+  - bioconda::trgt=4.1.0
diff --git a/modules/nf-core/trgt/genotype/main.nf b/modules/nf-core/trgt/genotype/main.nf
index c58f67af1cee..1fe75f7d60de 100644
--- a/modules/nf-core/trgt/genotype/main.nf
+++ b/modules/nf-core/trgt/genotype/main.nf
@@ -4,8 +4,8 @@ process TRGT_GENOTYPE {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/trgt:4.0.0--h9ee0642_0':
-        'biocontainers/trgt:4.0.0--h9ee0642_0' }"
+        'https://depot.galaxyproject.org/singularity/trgt:4.1.0--h9ee0642_0':
+        'biocontainers/trgt:4.1.0--h9ee0642_0' }"
 
     input:
     tuple val(meta) , path(bam), path(bai), val(karyotype)
@@ -15,8 +15,8 @@ process TRGT_GENOTYPE {
 
     output:
     tuple val(meta), path("*.vcf.gz")      , emit: vcf
-    tuple val(meta), path("*.spanning.bam"), emit: bam     , optional: true
-    path "versions.yml"                    , emit: versions
+    tuple val(meta), path("*.spanning.bam"), emit: bam, optional: true
+    tuple val("${task.process}"), val('trgt'), eval("trgt --version | sed 's/.* //g'"), emit: versions_trgt, topic: versions
 
     when:
     task.ext.when == null || task.ext.when
diff --git a/modules/nf-core/trgt/genotype/meta.yml b/modules/nf-core/trgt/genotype/meta.yml
index 29b5e046fa3c..fef18e236b9d 100644
--- a/modules/nf-core/trgt/genotype/meta.yml
+++ b/modules/nf-core/trgt/genotype/meta.yml
@@ -94,14 +94,28 @@ output:
           description: BAM file with pieces of reads aligning to repeats
           pattern: "*.spanning.bam"
           ontologies: []
-  versions:
-    - versions.yml:
-        type: file
-        description: File containing software versions
-        pattern: "versions.yml"
+  versions_trgt:
+    - - ${task.process}:
+          type: string
+          description: The name of the process
+      - trgt:
+          type: string
+          description: The name of the tool
+      - trgt --version | sed 's/.* //g':
+          type: eval
+          description: The expression to obtain the version of the tool
 
-        ontologies:
-          - edam: http://edamontology.org/format_3750 # YAML
+topics:
+  versions:
+    - - ${task.process}:
+          type: string
+          description: The name of the process
+      - trgt:
+          type: string
+          description: The name of the tool
+      - trgt --version | sed 's/.* //g':
+          type: eval
+          description: The expression to obtain the version
 authors:
   - "@Schmytzi"
   - "@fellen31"
diff --git a/modules/nf-core/trgt/genotype/tests/main.nf.test b/modules/nf-core/trgt/genotype/tests/main.nf.test
index 12fd8335c3b6..6f2c663d23d4 100644
--- a/modules/nf-core/trgt/genotype/tests/main.nf.test
+++ b/modules/nf-core/trgt/genotype/tests/main.nf.test
@@ -59,7 +59,9 @@ nextflow_process {
         then {
             assertAll(
                 { assert process.success },
-                { assert snapshot(process.out).match() }
+                { assert snapshot(
+                    process.out,
+                ).match() }
             )
         }
 
diff --git a/modules/nf-core/trgt/genotype/tests/main.nf.test.snap b/modules/nf-core/trgt/genotype/tests/main.nf.test.snap
index b5a6591e3cd1..70dd85f39bbd 100644
--- a/modules/nf-core/trgt/genotype/tests/main.nf.test.snap
+++ b/modules/nf-core/trgt/genotype/tests/main.nf.test.snap
@@ -7,7 +7,7 @@
                         {
                             "id": "test"
                         },
-                        "test.vcf.gz:md5,9d5f7877193d0c8a6fbce7c9f82ab05b"
+                        "test.vcf.gz:md5,cb694061956ddcd63772baf9a0720624"
                     ]
                 ],
                 "1": [
@@ -15,18 +15,22 @@
                         {
                             "id": "test"
                         },
-                        "test.spanning.bam:md5,22cb334e5936fa940c3a78c89ba7477c"
+                        "test.spanning.bam:md5,47da98a17e3bc7b4b234c59a435a38ca"
                     ]
                 ],
                 "2": [
-                    "versions.yml:md5,cf70c46a111ed5f7a9bdd432b6f579b6"
+                    [
+                        "TRGT_GENOTYPE",
+                        "trgt",
+                        "4.1.0-39fa24c"
+                    ]
                 ],
                 "bam": [
                     [
                         {
                             "id": "test"
                         },
-                        "test.spanning.bam:md5,22cb334e5936fa940c3a78c89ba7477c"
+                        "test.spanning.bam:md5,47da98a17e3bc7b4b234c59a435a38ca"
                     ]
                 ],
                 "vcf": [
@@ -34,11 +38,15 @@
                         {
                             "id": "test"
                         },
-                        "test.vcf.gz:md5,9d5f7877193d0c8a6fbce7c9f82ab05b"
+                        "test.vcf.gz:md5,cb694061956ddcd63772baf9a0720624"
                     ]
                 ],
-                "versions": [
-                    "versions.yml:md5,cf70c46a111ed5f7a9bdd432b6f579b6"
+                "versions_trgt": [
+                    [
+                        "TRGT_GENOTYPE",
+                        "trgt",
+                        "4.1.0-39fa24c"
+                    ]
                 ]
             }
         ],
@@ -46,7 +54,7 @@
             "nf-test": "0.9.2",
             "nextflow": "25.04.6"
         },
-        "timestamp": "2025-10-23T11:19:06.149363798"
+        "timestamp": "2025-12-09T16:16:00.489435938"
     },
     "homo sapiens - [bam,bai,[]], [fa,fai], bed - stub": {
         "content": [
@@ -56,7 +64,7 @@
                         {
                             "id": "test"
                         },
-                        "test.vcf.gz:md5,03899fb4a8ca115e54a1db46800096cb"
+                        "test.vcf.gz:md5,2015f1ef3d10bf8ce99882099b61b185"
                     ]
                 ],
                 "1": [
@@ -64,18 +72,22 @@
                         {
                             "id": "test"
                         },
-                        "test.spanning.bam:md5,0f1755fd47e7c942fda2282c5da2e8e8"
+                        "test.spanning.bam:md5,1370db3a5d025cdde50676fab4235c5f"
                     ]
                 ],
                 "2": [
-                    "versions.yml:md5,cf70c46a111ed5f7a9bdd432b6f579b6"
+                    [
+                        "TRGT_GENOTYPE",
+                        "trgt",
+                        "4.1.0-39fa24c"
+                    ]
                 ],
                 "bam": [
                     [
                         {
                             "id": "test"
                         },
-                        "test.spanning.bam:md5,0f1755fd47e7c942fda2282c5da2e8e8"
+                        "test.spanning.bam:md5,1370db3a5d025cdde50676fab4235c5f"
                     ]
                 ],
                 "vcf": [
@@ -83,11 +95,15 @@
                         {
                             "id": "test"
                         },
-                        "test.vcf.gz:md5,03899fb4a8ca115e54a1db46800096cb"
+                        "test.vcf.gz:md5,2015f1ef3d10bf8ce99882099b61b185"
                     ]
                 ],
-                "versions": [
-                    "versions.yml:md5,cf70c46a111ed5f7a9bdd432b6f579b6"
+                "versions_trgt": [
+                    [
+                        "TRGT_GENOTYPE",
+                        "trgt",
+                        "4.1.0-39fa24c"
+                    ]
                 ]
             }
         ],
@@ -95,7 +111,7 @@
             "nf-test": "0.9.2",
             "nextflow": "25.04.6"
         },
-        "timestamp": "2025-10-23T11:19:21.404862883"
+        "timestamp": "2025-12-09T16:16:15.759484541"
     },
     "homo sapiens - [bam,bai,XX], [fa,fai], bed - stub": {
         "content": [
@@ -117,7 +133,11 @@
                     ]
                 ],
                 "2": [
-                    "versions.yml:md5,cf70c46a111ed5f7a9bdd432b6f579b6"
+                    [
+                        "TRGT_GENOTYPE",
+                        "trgt",
+                        "4.1.0-39fa24c"
+                    ]
                 ],
                 "bam": [
                     [
@@ -135,8 +155,12 @@
                         "test.vcf.gz:md5,68b329da9893e34099c7d8ad5cb9c940"
                     ]
                 ],
-                "versions": [
-                    "versions.yml:md5,cf70c46a111ed5f7a9bdd432b6f579b6"
+                "versions_trgt": [
+                    [
+                        "TRGT_GENOTYPE",
+                        "trgt",
+                        "4.1.0-39fa24c"
+                    ]
                 ]
             }
         ],
@@ -144,7 +168,7 @@
             "nf-test": "0.9.2",
             "nextflow": "25.04.6"
         },
-        "timestamp": "2025-10-23T11:19:16.057879354"
+        "timestamp": "2025-12-09T16:16:10.709433028"
     },
     "homo sapiens - [bam,bai,[]], [fa,fai], bed": {
         "content": [
@@ -154,7 +178,7 @@
                         {
                             "id": "test"
                         },
-                        "test.vcf.gz:md5,03899fb4a8ca115e54a1db46800096cb"
+                        "test.vcf.gz:md5,2015f1ef3d10bf8ce99882099b61b185"
                     ]
                 ],
                 "1": [
@@ -162,18 +186,22 @@
                         {
                             "id": "test"
                         },
-                        "test.spanning.bam:md5,0f1755fd47e7c942fda2282c5da2e8e8"
+                        "test.spanning.bam:md5,1370db3a5d025cdde50676fab4235c5f"
                     ]
                 ],
                 "2": [
-                    "versions.yml:md5,cf70c46a111ed5f7a9bdd432b6f579b6"
+                    [
+                        "TRGT_GENOTYPE",
+                        "trgt",
+                        "4.1.0-39fa24c"
+                    ]
                 ],
                 "bam": [
                     [
                         {
                             "id": "test"
                         },
-                        "test.spanning.bam:md5,0f1755fd47e7c942fda2282c5da2e8e8"
+                        "test.spanning.bam:md5,1370db3a5d025cdde50676fab4235c5f"
                     ]
                 ],
                 "vcf": [
@@ -181,11 +209,15 @@
                         {
                             "id": "test"
                         },
-                        "test.vcf.gz:md5,03899fb4a8ca115e54a1db46800096cb"
+                        "test.vcf.gz:md5,2015f1ef3d10bf8ce99882099b61b185"
                     ]
                 ],
-                "versions": [
-                    "versions.yml:md5,cf70c46a111ed5f7a9bdd432b6f579b6"
+                "versions_trgt": [
+                    [
+                        "TRGT_GENOTYPE",
+                        "trgt",
+                        "4.1.0-39fa24c"
+                    ]
                 ]
             }
         ],
@@ -193,6 +225,6 @@
             "nf-test": "0.9.2",
             "nextflow": "25.04.6"
         },
-        "timestamp": "2025-10-23T11:19:10.595588655"
+        "timestamp": "2025-12-09T16:16:05.648952742"
     }
 }
\ No newline at end of file
diff --git a/modules/nf-core/trgt/merge/environment.yml b/modules/nf-core/trgt/merge/environment.yml
index 8174b1f6505c..5ff336d40646 100644
--- a/modules/nf-core/trgt/merge/environment.yml
+++ b/modules/nf-core/trgt/merge/environment.yml
@@ -4,4 +4,4 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - bioconda::trgt=4.0.0
+  - bioconda::trgt=4.1.0
diff --git a/modules/nf-core/trgt/merge/main.nf b/modules/nf-core/trgt/merge/main.nf
index 815d291c0365..07cf2d9c640f 100644
--- a/modules/nf-core/trgt/merge/main.nf
+++ b/modules/nf-core/trgt/merge/main.nf
@@ -4,8 +4,8 @@ process TRGT_MERGE {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/trgt:4.0.0--h9ee0642_0':
-        'biocontainers/trgt:4.0.0--h9ee0642_0' }"
+        'https://depot.galaxyproject.org/singularity/trgt:4.1.0--h9ee0642_0':
+        'biocontainers/trgt:4.1.0--h9ee0642_0' }"
 
     input:
     tuple val(meta) , path(vcfs), path(tbis)
@@ -14,7 +14,7 @@ process TRGT_MERGE {
 
     output:
     tuple val(meta), path("*.{vcf,vcf.gz,bcf,bcf.gz}"), emit: vcf
-    path "versions.yml"                               , emit: versions
+    tuple val("${task.process}"), val('trgt'), eval("trgt --version | sed 's/.* //g'"), emit: versions_trgt, topic: versions
 
     when:
     task.ext.when == null || task.ext.when
diff --git a/modules/nf-core/trgt/merge/meta.yml b/modules/nf-core/trgt/merge/meta.yml
index 3020ea10976e..72ed57d50a93 100644
--- a/modules/nf-core/trgt/merge/meta.yml
+++ b/modules/nf-core/trgt/merge/meta.yml
@@ -72,14 +72,28 @@ output:
           description: "Merged output file"
           pattern: "*.{vcf,vcf.gz,bcf,bcf.gz}"
           ontologies: []
-  versions:
-    - versions.yml:
-        type: file
-        description: File containing software versions
-        pattern: "versions.yml"
+  versions_trgt:
+    - - ${task.process}:
+          type: string
+          description: The name of the process
+      - trgt:
+          type: string
+          description: The name of the tool
+      - trgt --version | sed 's/.* //g':
+          type: eval
+          description: The expression to obtain the version of the tool
 
-        ontologies:
-          - edam: http://edamontology.org/format_3750 # YAML
+topics:
+  versions:
+    - - ${task.process}:
+          type: string
+          description: The name of the process
+      - trgt:
+          type: string
+          description: The name of the tool
+      - trgt --version | sed 's/.* //g':
+          type: eval
+          description: The expression to obtain the version
 authors:
   - "@Schmytzi"
 maintainers:
diff --git a/modules/nf-core/trgt/merge/tests/main.nf.test b/modules/nf-core/trgt/merge/tests/main.nf.test
index d25e871ed28a..5b3697a1e233 100644
--- a/modules/nf-core/trgt/merge/tests/main.nf.test
+++ b/modules/nf-core/trgt/merge/tests/main.nf.test
@@ -95,7 +95,7 @@ nextflow_process {
                     path(process.out.vcf.get(0).get(1)).vcf.variantsMD5,
                     path(process.out.vcf.get(0).get(1)).vcf.summary,
                     path(process.out.vcf.get(0).get(1)).vcf.sampleCount,
-                    process.out.versions
+                    process.out.findAll { key, val -> key.startsWith("versions")}
                 ).match() }
             )
         }
@@ -120,7 +120,7 @@ nextflow_process {
                     path(process.out.vcf.get(0).get(1)).vcf.variantsMD5,
                     path(process.out.vcf.get(0).get(1)).vcf.summary,
                     path(process.out.vcf.get(0).get(1)).vcf.sampleCount,
-                    process.out.versions
+                    process.out.findAll { key, val -> key.startsWith("versions")}
                 ).match() }
             )
         }
@@ -165,7 +165,7 @@ nextflow_process {
                     path(process.out.vcf.get(0).get(1)).vcf.variantsMD5,
                     path(process.out.vcf.get(0).get(1)).vcf.summary,
                     path(process.out.vcf.get(0).get(1)).vcf.sampleCount,
-                    process.out.versions
+                    process.out.findAll { key, val -> key.startsWith("versions")}
                 ).match() }
             )
         }
@@ -187,7 +187,10 @@ nextflow_process {
         then {
             assertAll(
                 { assert process.success },
-                { assert snapshot(process.out).match() }
+                { assert snapshot(
+                    process.out,
+                    process.out.findAll { key, val -> key.startsWith("versions")}
+                ).match() }
             )
         }
     }
diff --git a/modules/nf-core/trgt/merge/tests/main.nf.test.snap b/modules/nf-core/trgt/merge/tests/main.nf.test.snap
index b299852bb314..147860e39619 100644
--- a/modules/nf-core/trgt/merge/tests/main.nf.test.snap
+++ b/modules/nf-core/trgt/merge/tests/main.nf.test.snap
@@ -4,30 +4,42 @@
             "ec69cbc40d4a9766d87a62ba4835ae52",
             "VcfFile [chromosomes=[chr22], sampleCount=2, variantCount=1, phased=false, phasedAutodetect=false]",
             2,
-            [
-                "versions.yml:md5,32d0e033481d117ce09ad340b854ac07"
-            ]
+            {
+                "versions_trgt": [
+                    [
+                        "TRGT_MERGE",
+                        "trgt",
+                        "4.1.0-39fa24c"
+                    ]
+                ]
+            }
         ],
         "meta": {
             "nf-test": "0.9.2",
             "nextflow": "25.04.6"
         },
-        "timestamp": "2025-10-23T11:19:32.225480759"
+        "timestamp": "2025-12-06T13:08:24.392230593"
     },
     "homo sapiens - 2 VCFs": {
         "content": [
             "ec69cbc40d4a9766d87a62ba4835ae52",
             "VcfFile [chromosomes=[chr22], sampleCount=2, variantCount=1, phased=false, phasedAutodetect=false]",
             2,
-            [
-                "versions.yml:md5,32d0e033481d117ce09ad340b854ac07"
-            ]
+            {
+                "versions_trgt": [
+                    [
+                        "TRGT_MERGE",
+                        "trgt",
+                        "4.1.0-39fa24c"
+                    ]
+                ]
+            }
         ],
         "meta": {
             "nf-test": "0.9.2",
             "nextflow": "25.04.6"
         },
-        "timestamp": "2025-10-23T11:19:26.833626863"
+        "timestamp": "2025-12-06T13:08:18.192678929"
     },
     "homo sapiens - 2 VCFs - stub": {
         "content": [
@@ -41,7 +53,11 @@
                     ]
                 ],
                 "1": [
-                    "versions.yml:md5,32d0e033481d117ce09ad340b854ac07"
+                    [
+                        "TRGT_MERGE",
+                        "trgt",
+                        "4.1.0-39fa24c"
+                    ]
                 ],
                 "vcf": [
                     [
@@ -51,8 +67,21 @@
                         "test.vcf:md5,d41d8cd98f00b204e9800998ecf8427e"
                     ]
                 ],
-                "versions": [
-                    "versions.yml:md5,32d0e033481d117ce09ad340b854ac07"
+                "versions_trgt": [
+                    [
+                        "TRGT_MERGE",
+                        "trgt",
+                        "4.1.0-39fa24c"
+                    ]
+                ]
+            },
+            {
+                "versions_trgt": [
+                    [
+                        "TRGT_MERGE",
+                        "trgt",
+                        "4.1.0-39fa24c"
+                    ]
                 ]
             }
         ],
@@ -60,21 +89,27 @@
             "nf-test": "0.9.2",
             "nextflow": "25.04.6"
         },
-        "timestamp": "2025-10-23T11:19:48.710491165"
+        "timestamp": "2025-12-06T13:08:42.242325427"
     },
     "homo sapiens - 1 VCF - --force-single": {
         "content": [
             "57131f453c695cbea40812f6c246d0f",
             "VcfFile [chromosomes=[chr22], sampleCount=1, variantCount=1, phased=false, phasedAutodetect=false]",
             1,
-            [
-                "versions.yml:md5,32d0e033481d117ce09ad340b854ac07"
-            ]
+            {
+                "versions_trgt": [
+                    [
+                        "TRGT_MERGE",
+                        "trgt",
+                        "4.1.0-39fa24c"
+                    ]
+                ]
+            }
         ],
         "meta": {
             "nf-test": "0.9.2",
             "nextflow": "25.04.6"
         },
-        "timestamp": "2025-10-23T11:19:42.468465675"
+        "timestamp": "2025-12-06T13:08:36.269439614"
     }
 }
\ No newline at end of file
diff --git a/modules/nf-core/trgt/plot/environment.yml b/modules/nf-core/trgt/plot/environment.yml
index 8174b1f6505c..5ff336d40646 100644
--- a/modules/nf-core/trgt/plot/environment.yml
+++ b/modules/nf-core/trgt/plot/environment.yml
@@ -4,4 +4,4 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - bioconda::trgt=4.0.0
+  - bioconda::trgt=4.1.0
diff --git a/modules/nf-core/trgt/plot/main.nf b/modules/nf-core/trgt/plot/main.nf
index e252fd25efe9..c0d70507e2e9 100644
--- a/modules/nf-core/trgt/plot/main.nf
+++ b/modules/nf-core/trgt/plot/main.nf
@@ -4,8 +4,8 @@ process TRGT_PLOT {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/trgt:4.0.0--h9ee0642_0':
-        'biocontainers/trgt:4.0.0--h9ee0642_0' }"
+        'https://depot.galaxyproject.org/singularity/trgt:4.1.0--h9ee0642_0':
+        'biocontainers/trgt:4.1.0--h9ee0642_0' }"
 
     input:
     tuple val(meta) , path(bam), path(bai), path(vcf), path(tbi), val(repeat_id)
@@ -15,7 +15,7 @@ process TRGT_PLOT {
 
     output:
     tuple val(meta), path("*.{png,pdf,svg}"), emit: plot
-    path "versions.yml"                     , emit: versions
+    tuple val("${task.process}"), val('trgt'), eval("trgt --version | sed 's/.* //g'"), emit: versions_trgt, topic: versions
 
     when:
     task.ext.when == null || task.ext.when
diff --git a/modules/nf-core/trgt/plot/meta.yml b/modules/nf-core/trgt/plot/meta.yml
index 00a06ac000a5..8435c7aecd5d 100644
--- a/modules/nf-core/trgt/plot/meta.yml
+++ b/modules/nf-core/trgt/plot/meta.yml
@@ -91,14 +91,28 @@ output:
           description: "Plot of region and reads spanning tandem repeat"
           pattern: "*.{png,pdf,svg}"
           ontologies: []
-  versions:
-    - versions.yml:
-        type: file
-        description: File containing software versions
-        pattern: "versions.yml"
+  versions_trgt:
+    - - ${task.process}:
+          type: string
+          description: The name of the process
+      - trgt:
+          type: string
+          description: The name of the tool
+      - trgt --version | sed 's/.* //g':
+          type: eval
+          description: The expression to obtain the version of the tool
 
-        ontologies:
-          - edam: http://edamontology.org/format_3750 # YAML
+topics:
+  versions:
+    - - ${task.process}:
+          type: string
+          description: The name of the process
+      - trgt:
+          type: string
+          description: The name of the tool
+      - trgt --version | sed 's/.* //g':
+          type: eval
+          description: The expression to obtain the version
 authors:
   - "@Schmytzi"
 maintainers:
diff --git a/modules/nf-core/trgt/plot/tests/main.nf.test b/modules/nf-core/trgt/plot/tests/main.nf.test
index 175da2e4c946..a7fd516b3a3e 100644
--- a/modules/nf-core/trgt/plot/tests/main.nf.test
+++ b/modules/nf-core/trgt/plot/tests/main.nf.test
@@ -107,7 +107,7 @@ nextflow_process {
                 { assert process.success },
                 { assert snapshot(
                     file(process.out.plot.get(0).get(1)).name, //unstable
-                    process.out.versions
+                    process.out.findAll { key, val -> key.startsWith("versions")}
                 ).match() }
             )
         }
@@ -136,7 +136,7 @@ nextflow_process {
                 { assert process.success },
                 { assert snapshot(
                     file(process.out.plot.get(0).get(1)).name, //unstable
-                    process.out.versions
+                    process.out.findAll { key, val -> key.startsWith("versions")}
                 ).match() }
             )
         }
diff --git a/modules/nf-core/trgt/plot/tests/main.nf.test.snap b/modules/nf-core/trgt/plot/tests/main.nf.test.snap
index 18d41e94c0ee..4590da7275fb 100644
--- a/modules/nf-core/trgt/plot/tests/main.nf.test.snap
+++ b/modules/nf-core/trgt/plot/tests/main.nf.test.snap
@@ -2,27 +2,39 @@
     "homo sapiens - [bam, bai, vcf, TEST], fasta, fai, bed - stub": {
         "content": [
             "test.png",
-            [
-                "versions.yml:md5,011b1667b12181926498f87d148ee365"
-            ]
+            {
+                "versions_trgt": [
+                    [
+                        "TRGT_PLOT",
+                        "trgt",
+                        "4.1.0-39fa24c"
+                    ]
+                ]
+            }
         ],
         "meta": {
             "nf-test": "0.9.2",
             "nextflow": "25.04.6"
         },
-        "timestamp": "2025-10-23T11:20:01.293786322"
+        "timestamp": "2025-12-06T13:08:55.463192387"
     },
     "homo sapiens - [bam, bai, vcf, TEST], fasta, fai, bed": {
         "content": [
             "test_TEST.png",
-            [
-                "versions.yml:md5,011b1667b12181926498f87d148ee365"
-            ]
+            {
+                "versions_trgt": [
+                    [
+                        "TRGT_PLOT",
+                        "trgt",
+                        "4.1.0-39fa24c"
+                    ]
+                ]
+            }
         ],
         "meta": {
             "nf-test": "0.9.2",
             "nextflow": "25.04.6"
         },
-        "timestamp": "2025-10-23T11:19:54.583487786"
+        "timestamp": "2025-12-06T13:08:48.783944144"
     }
 }
\ No newline at end of file