Updated the test files.

Author: friedenhe

.github/workflows/code_cov.yml

@@ -0,0 +1,34 @@
+name: codecov
+
+on: [push, pull_request]
+
+env:
+  REPO_NAME: 'pyofm'
+  DOCKER_WORKING_DIR: '/home/dafoamuser/dafoam/$REPO_NAME'
+  DOCKER_MOUNT_DIR: '/home/dafoamuser/mount/$REPO_NAME'
+  DOCKER_TAG: 'latest'
+  DOCKER_ENV_FILE: '/home/dafoamuser/dafoam/loadDAFoam.sh'
+
+jobs:
+  code_coverage:
+    runs-on: ubuntu-22.04
+    name: Codecov
+    steps:
+    - uses: actions/checkout@main
+    - name: Create the docker container and run the tests
+      run: |
+        docker pull dafoam/opt-packages:${{env.DOCKER_TAG}}
+        docker run -i -d -u dafoamuser --name regtest -v $GITHUB_WORKSPACE:${{env.DOCKER_MOUNT_DIR}} dafoam/opt-packages:${{env.DOCKER_TAG}} /bin/bash
+        docker exec -i regtest /bin/bash -c "rm -rf ${{env.DOCKER_WORKING_DIR}} && cp -r ${{env.DOCKER_MOUNT_DIR}} ${{env.DOCKER_WORKING_DIR}}"
+        docker exec -i regtest /bin/bash -c ". ${{env.DOCKER_ENV_FILE}} && cd ${{env.DOCKER_WORKING_DIR}}/src && . ./.add_coverage_flag.sh"
+        docker exec -i -e COMPILE_DAFOAM_ADF=1 regtest /bin/bash -c ". ${{env.DOCKER_ENV_FILE}} && cd ${{env.DOCKER_WORKING_DIR}} && pip install ."
+        docker exec -i -e DF_CHECK_COVERAGE=1 regtest /bin/bash -c ". ${{env.DOCKER_ENV_FILE}} && cd ${{env.DOCKER_WORKING_DIR}}/reg_tests && coverage run run_reg_tests.py"
+        docker exec -i regtest /bin/bash -c ". ${{env.DOCKER_ENV_FILE}} && cd ${{env.DOCKER_WORKING_DIR}}/reg_tests && coverage combine && coverage xml && echo dafoamuser | sudo -S cp -r coverage.xml ${{env.DOCKER_MOUNT_DIR}}/"
+        docker exec -i regtest /bin/bash -c ". ${{env.DOCKER_ENV_FILE}} && cd ${{env.DOCKER_WORKING_DIR}} && lcov --capture --directory . --output-file coverage.info && echo dafoamuser | sudo -S cp -r coverage.info ${{env.DOCKER_MOUNT_DIR}}/"
+    - name: Upload
+      uses: codecov/codecov-action@v4
+      with:
+        fail_ci_if_error: true 
+        files: ./coverage.info 
+        token: ${{secrets.CODECOV_TOKEN}}
+        verbose: true

.github/workflows/reg_tests.yml

@@ -11,18 +11,16 @@ env:
 jobs:
 
   regresstion_tests:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-22.04
     name: Regression tests
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@main
     - name: Create the docker container and run the tests
       run: |
         docker pull dafoam/opt-packages:${{env.DOCKER_TAG}}
         docker run -i -d -u dafoamuser --name regtest -v $GITHUB_WORKSPACE:${{env.DOCKER_MOUNT_DIR}} dafoam/opt-packages:${{env.DOCKER_TAG}} /bin/bash
         docker exec -i regtest /bin/bash -c "rm -rf ${{ env.DOCKER_WORKING_DIR}} && cp -r ${{env.DOCKER_MOUNT_DIR}} ${{env.DOCKER_WORKING_DIR}}"
-        docker exec -i regtest /bin/bash -c ". /home/dafoamuser/dafoam/loadDAFoam.sh && cd ${{env.DOCKER_WORKING_DIR}} && make && pip install ."
+        docker exec -i regtest /bin/bash -c ". /home/dafoamuser/dafoam/loadDAFoam.sh && cd ${{env.DOCKER_WORKING_DIR}} && pip install ."
         docker exec -i regtest /bin/bash -c "cd ${{env.DOCKER_WORKING_DIR}}/reg_tests && rm -rf input.tar.gz && wget https://github.com/mdolab/pyofm/raw/main/reg_tests/input.tar.gz && tar -xzf input.tar.gz"
         docker exec -i regtest /bin/bash -c ". /home/dafoamuser/dafoam/loadDAFoam.sh && cd ${{env.DOCKER_WORKING_DIR}}/reg_tests && python run_reg_tests.py"
-        #docker exec regtest sed -i -e 's/real-opt/complex-opt/g' /home/dafoamuser/dafoam/loadDAFoam.sh
-        #docker exec -i regtest /bin/bash -c ". /home/dafoamuser/dafoam/loadDAFoam.sh && rm -rf /home/dafoamuser/dafoam/packages/petsc-3.11.4/real-opt && cd /home/dafoamuser/dafoam && git clone https://github.com/mdolab/idwarp && cd idwarp && make -f Makefile_CS && pip uninstall idwarp && pip install . && cd ${{env.DOCKER_WORKING_DIR}}/reg_tests && python run_reg_tests_cs.py"
 

reg_tests/.coveragerc

@@ -0,0 +1,3 @@
+[coverage:run]
+parallel = true
+include = /home/dafoamuser/dafoam/packages/miniconda3/lib/python3.9/site-packages/pyofm/pyOFM.py

src/.add_coverage_flag.sh

@@ -0,0 +1,5 @@
+#!/usr/bin/env bash
+
+sed -i 's/finiteVolume\/lnInclude/finiteVolume\/lnInclude -fprofile-arcs -ftest-coverage/g' Make/options
+sed -i 's/-lfiniteVolume/-lfiniteVolume -lgcov/g' Make/options
+