diff --git a/.Rbuildignore b/.Rbuildignore index 4e6c9ec6f..a318771f7 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -3,3 +3,5 @@ ^.*\.Rproj$ ^\.Rproj\.user$ ^\examples$ +^\.positai$ +^\.claude$ diff --git a/.gitignore b/.gitignore index ca9104d9e..4d25efb4a 100644 --- a/.gitignore +++ b/.gitignore @@ -64,3 +64,4 @@ renv/ _processedLockFile.lock .vscode/ +.positai diff --git a/DESCRIPTION b/DESCRIPTION index a9186dd62..a67872610 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -28,7 +28,6 @@ Imports: jaspDescriptives, jaspGraphs, lubridate, - mle.tools, psych, qcc, rsm, diff --git a/R/TimeWeightedCharts.R b/R/TimeWeightedCharts.R index 153f9a006..3737965a9 100644 --- a/R/TimeWeightedCharts.R +++ b/R/TimeWeightedCharts.R @@ -58,7 +58,7 @@ timeWeightedCharts <- function(jaspResults, dataset, options) { if ((!wideFormat && options[["subgroupSizeType"]] == "manual" && any(lapply(split(dataset[[stages]], ceiling(seq_along(dataset[[stages]])/options[["manualSubgroupSizeValue"]])), FUN = function(x)length(unique(x))) > 1)) || (!wideFormat && options[["subgroupSizeType"]] == "groupingVariable" && - any(table(dplyr::count_(dataset, vars = c(stages, subgroupVariable))[subgroupVariable]) > 1))) { + any(table(dplyr::count(dataset, dplyr::across(dplyr::all_of(c(stages, subgroupVariable))))[[subgroupVariable]]) > 1))) { plotNotes <- paste0(plotNotes, gettext("One or more subgroups are assigned to more than one stage, only first stage is considered.
")) } if (anyNA(dataset[[stages]])) { diff --git a/R/doeAnalysis.R b/R/doeAnalysis.R index bd47f4dd4..d3fc711f1 100644 --- a/R/doeAnalysis.R +++ b/R/doeAnalysis.R @@ -23,10 +23,11 @@ # avoid e-notation for small-to-moderate numbers mag <- floor(log10(absVal)) sigDigits <- max(digits, mag + 1 + digits) - trimws(formatC(val, digits = sigDigits, format = "g", drop0trailing = TRUE)) + formatted <- trimws(formatC(val, digits = sigDigits, format = "g", drop0trailing = TRUE)) } else { - trimws(formatC(val, digits = digits, format = "g", drop0trailing = TRUE)) + formatted <- trimws(formatC(val, digits = digits, format = "g", drop0trailing = TRUE)) } + sub("^-", "\u2013", formatted) }, character(1)) } @@ -1485,7 +1486,7 @@ get_levels <- function(var, num_levels, dataset) { return() } - tb <- createJaspTable(gettext("ANOVA")) + tb <- createJaspTable(gettext("Analysis of Variance")) tb$addColumnInfo(name = "terms", title = gettext("Source"), type = "string") tb$addColumnInfo(name = "adjss", title = gettext("Sum of squares"), type = "number") tb$addColumnInfo(name = "df", title = gettext("df"), type = "integer") @@ -1916,6 +1917,13 @@ get_levels <- function(var, num_levels, dataset) { plotTitle <- gettextf("%1$s of %2$s vs %3$s", plotTypeString, dep, variablePairString) plot <- createJaspPlot(title = plotTitle, width = 500, height = 500) result <- jaspResults[[dep]][["doeResult"]]$object[["regression"]] + termLabels <- attr(stats::terms(result[["object"]]), "term.labels") + missingVars <- variablePair[!sapply(variablePair, function(var) any(grepl(var, termLabels, fixed = TRUE)))] + if (length(missingVars) > 0) { + plot$setError(gettext("Could not plot (some of the) selected variables as they were not included in the final model. They might have been removed during model selection.")) + jaspResults[[dep]][["contourSurfacePlot"]][[plotTitle]] <- plot + next + } if (plotType == "contourPlot") { plot$plotObject <- function(){.doeContourSurfacePlotObject(result, options, dep, variablePair, type = "contour")} } else if (plotType == "surfacePlot") { diff --git a/R/msaGaugeRR.R b/R/msaGaugeRR.R index 3452c86a9..72aa5c6dc 100644 --- a/R/msaGaugeRR.R +++ b/R/msaGaugeRR.R @@ -250,7 +250,7 @@ msaGaugeRR <- function(jaspResults, dataset, options, ...) { # Gauge r&R ANOVA Table if (options[["anova"]]) { if (is.null(jaspResults[["gaugeANOVA"]])) { - jaspResults[["gaugeANOVA"]] <- createJaspContainer(gettext("Gauge r&R ANOVA table")) + jaspResults[["gaugeANOVA"]] <- createJaspContainer(gettext("Gauge r&R Analysis of Variance table")) jaspResults[["gaugeANOVA"]]$dependOn(c("processVariationReference", "historicalSdValue", "report")) jaspResults[["gaugeANOVA"]]$position <- 1 } @@ -334,7 +334,11 @@ msaGaugeRR <- function(jaspResults, dataset, options, ...) { if(options[["trafficLightChart"]] & is.null(jaspResults[["trafficPlot"]] )) { jaspResults[["trafficPlot"]] <- createJaspContainer(gettext("Traffic light chart")) jaspResults[["trafficPlot"]]$position <- 9 - jaspResults[["trafficPlot"]]$dependOn(c("trafficLightChart", "toleranceValue", "tolerance", "gaugeRRmethod", "processVariationReference", "historicalSdValue", "report")) + jaspResults[["trafficPlot"]]$dependOn(c("trafficLightChart", "toleranceValue", "tolerance", "gaugeRRmethod", + "processVariationReference", "historicalSdValue", "studyVarianceMultiplierType", + "studyVarianceMultiplierValue", "measurementLongFormat", "operatorLongFormat", + "partLongFormat", "measurementsWideFormat", "operatorWideFormat", + "partWideFormat", "dataFormat", "type3", "report")) trafficContainer <- jaspResults[["trafficPlot"]] valuesVec <- .gaugeANOVA(dataset = dataset, measurements = measurements, parts = parts, operators = operators, options = options, ready = ready, returnTrafficValues = TRUE, Type3 = Type3) @@ -348,11 +352,11 @@ msaGaugeRR <- function(jaspResults, dataset, options, ...) { .gaugeANOVA <- function(dataset, measurements, parts, operators, options, ready, returnPlotOnly = FALSE, returnTrafficValues = FALSE, gaugeEvaluationDfOnly = FALSE, Type3 = FALSE) { - anovaTables <- createJaspContainer(gettext("Gauge r&R study - crossed ANOVA")) + anovaTables <- createJaspContainer(gettext("Gauge r&R study - crossed Analysis of Variance")) anovaTables$dependOn(c("anova", "gaugeRRmethod", "report")) anovaTables$position <- 1 - anovaTable1 <- createJaspTable(title = ifelse(Type3, gettext("One-way ANOVA table"), gettext("Two-way ANOVA table with interaction"))) + anovaTable1 <- createJaspTable(title = ifelse(Type3, gettext("One-way Analysis of Variance table"), gettext("Two-way Analysis of Variance table with interaction"))) anovaTable1$addColumnInfo(title = gettext("Source"), name = "source", type = "string" ) anovaTable1$addColumnInfo(title = gettext("df"), name = "Df", type = "integer") anovaTable1$addColumnInfo(title = gettext("Sum of squares"), name = "Sum Sq", type = "number") @@ -569,7 +573,7 @@ msaGaugeRR <- function(jaspResults, dataset, options, ...) { } else { - anovaTable2 <- createJaspTable(title = gettext("Two-way ANOVA table without interaction")) + anovaTable2 <- createJaspTable(title = gettext("Two-way Analysis of Variance table without interaction")) anovaTable2$addColumnInfo(title = gettext("Source"), name = "source", type = "string" ) anovaTable2$addColumnInfo(title = gettext("df"), name = "Df", type = "integer") anovaTable2$addColumnInfo(title = gettext("Sum of squares"), name = "Sum Sq", type = "number") @@ -904,7 +908,7 @@ msaGaugeRR <- function(jaspResults, dataset, options, ...) { } .gaugeVarCompGraph <- function(percentContributionValues, studyVariationValues, percentToleranceValues, Type3 = FALSE) { - sources <- gettext(c('Gauge r&R', 'Repeat', 'Reprod', 'Part-to-part')) + sources <- gettext(c("Gauge r&R", "Repeatability", "Reproducibility", "Part-to-part")) if (!all(is.na(percentToleranceValues))) { references <- gettextf(c('%% Contribution', '%% Study variation', '%% Tolerance')) values <- c(percentContributionValues, studyVariationValues, percentToleranceValues) @@ -927,7 +931,8 @@ msaGaugeRR <- function(jaspResults, dataset, options, ...) { position="dodge", stat = "identity") + jaspGraphs::themeJaspRaw() + jaspGraphs::geom_rangeframe() + - ggplot2::theme(legend.position = 'right', legend.title = ggplot2::element_blank()) + + ggplot2::theme(legend.position = "right", legend.title = ggplot2::element_blank(), + plot.margin = ggplot2::margin(5.5, 30, 5.5, 5.5, "pt")) + ggplot2::xlab(NULL) + ggplot2::scale_y_continuous(name = "Percent", breaks = yBreaks, limits = range(c(yBreaks, plotframe$value))) return(p) diff --git a/R/msaGaugeRRnonrep.R b/R/msaGaugeRRnonrep.R index a29508e3a..2c7b62f65 100644 --- a/R/msaGaugeRRnonrep.R +++ b/R/msaGaugeRRnonrep.R @@ -267,14 +267,19 @@ msaGaugeRRnonrep <- function(jaspResults, dataset, options, ...) { jaspResults[["trafficLightChart"]] <- .trafficplot(StudyVar = percentMSVar, ToleranceUsed = options[["tolerance"]], ToleranceVar = percentMSTolerance, options = options, ready = ready) - jaspResults[["trafficLightChart"]]$dependOn(c("trafficLightChart", "report")) + jaspResults[["trafficLightChart"]]$dependOn(c("trafficLightChart", "report", "processVariationReference", + "historicalSdValue", "tolerance", "toleranceValue", + "studyVarianceMultiplierType", "studyVarianceMultiplierValue", + "measurementLongFormat", "operatorLongFormat", "partLongFormat", + "measurementsWideFormat", "operatorWideFormat", "partWideFormat", + "dataFormat")) } } } .gaugeRRNonRep <- function(dataset, measurements, parts, operators, options, ready, plotOnly = FALSE, trafficPlotValuesOnly = FALSE, gaugeEvaluationDfOnly = FALSE) { - gaugeRRNonRepTables <- createJaspContainer(gettext("Gauge r&R study - nested ANOVA")) + gaugeRRNonRepTables <- createJaspContainer(gettext("Gauge r&R study - nested Analysis of Variance")) gaugeRRNonRepTables$position <- 1 gaugeRRNonRepTable1 <- createJaspTable(title = gettext("Gauge r&R (nested)")) diff --git a/R/msaTestRetest.R b/R/msaTestRetest.R index 06c8877ce..0b16b4df0 100644 --- a/R/msaTestRetest.R +++ b/R/msaTestRetest.R @@ -107,7 +107,10 @@ msaTestRetest <- function(jaspResults, dataset, options, ...) { if(options[["trafficLightChart"]] && is.null(jaspResults[["trafficPlot"]] )) { jaspResults[["trafficPlot"]] <- createJaspContainer(gettext("Traffic light chart")) jaspResults[["trafficPlot"]]$position <- 4 - jaspResults[["trafficPlot"]]$dependOn(c("trafficLightChart", "manualProcessSdValue", "manualProcessSd", "toleranceValue", "tolerance")) + jaspResults[["trafficPlot"]]$dependOn(c("trafficLightChart", "manualProcessSdValue", "manualProcessSd", + "toleranceValue", "tolerance", "measurementLongFormat", "measurementsWideFormat", + "partLongFormat", "partWideFormat", "operator", "dataFormat", + "measurementLongFormat", "measurementsWideFormat", "partLongFormat", "partWideFormat", "operator", "dataFormat")) TrafficContainer <- jaspResults[["trafficPlot"]] valuesVec <- .rAndRtableRange(dataset = dataset, measurements = measurements, parts = parts, operators = operators, options = options, jaspResults, ready = ready, GRRpercent = TRUE) diff --git a/R/processCapabilityStudies.R b/R/processCapabilityStudies.R index 0759f0e31..464ed7275 100644 --- a/R/processCapabilityStudies.R +++ b/R/processCapabilityStudies.R @@ -59,7 +59,7 @@ processCapabilityStudies <- function(jaspResults, dataset, options) { if ((!wideFormat && options[["subgroupSizeType"]] == "manual" && any(lapply(split(dataset[[stages]], ceiling(seq_along(dataset[[stages]])/options[["manualSubgroupSizeValue"]])), FUN = function(x)length(unique(x))) > 1)) || (!wideFormat && options[["subgroupSizeType"]] == "groupingVariable" && - any(table(dplyr::count_(dataset, vars = c(stages, subgroupVariable))[subgroupVariable]) > 1))) { + any(table(dplyr::count(dataset, dplyr::across(dplyr::all_of(c(stages, subgroupVariable))))[[subgroupVariable]]) > 1))) { plotNotes <- paste0(plotNotes, gettext("One or more subgroups are assigned to more than one stage, only first stage is considered.
")) } if (anyNA(dataset[[stages]])) { @@ -2703,6 +2703,37 @@ processCapabilityStudies <- function(jaspResults, dataset, options) { return(plot) } +.qcObservedVarcov <- function(logdensity, X, parms, mle) { + mle <- unlist(mle) + + if (!all(parms %in% names(mle))) { + if (length(mle) != length(parms)) + stop(gettext("Could not compute variance-covariance matrix: parameter vector has unexpected length."), call. = FALSE) + + names(mle) <- parms + } + + mle <- as.numeric(mle[parms]) + names(mle) <- parms + + negLogLik <- function(theta) { + names(theta) <- parms + env <- list2env(c(as.list(theta), list(x = X)), parent = baseenv()) + ll <- eval(logdensity, envir = env) + -sum(ll) + } + + hessian <- stats::optimHess(par = mle, fn = negLogLik) + + if (anyNA(hessian) || any(!is.finite(hessian))) + stop(gettext("Could not compute variance-covariance matrix: Hessian contains invalid values."), call. = FALSE) + + varcov <- solve(hessian) + dimnames(varcov) <- list(parms, parms) + + list(varcov = varcov) +} + .qcProbabilityPlotObject <- function(options, dataset, measurements, stages) { if (identical(stages, "")) { nStages <- 1 @@ -2749,8 +2780,8 @@ processCapabilityStudies <- function(jaspResults, dataset, options) { # Computing according to the distribution if (options[["nullDistribution"]] == "normal") { lpdf <- quote(-log(sigma) - 0.5 / sigma ^ 2 * (x - mu) ^ 2) - matrix <- try(mle.tools::observed.varcov(logdensity = lpdf, X = dataCurrentStage, parms = c("mu", "sigma"), - mle = c(mean(dataCurrentStage), sd(dataCurrentStage)))) + matrix <- try(.qcObservedVarcov(logdensity = lpdf, X = dataCurrentStage, parms = c("mu", "sigma"), + mle = c(mean(dataCurrentStage), sd(dataCurrentStage)))) # Gracefully handle confidence band computation failure if (jaspBase::isTryError(matrix)) { hasConfidenceBands <- FALSE @@ -2781,7 +2812,7 @@ processCapabilityStudies <- function(jaspResults, dataset, options) { meanlog <- as.numeric(fit$parameters[1]) sdlog <- as.numeric(fit$parameters[2]) lpdf <- quote(log(1/(sqrt(2*pi)*x*sdlog) * exp(-(log(x)- meanlog)^2/(2*sdlog^2)))) - matrix <- try(mle.tools::observed.varcov(logdensity = lpdf, X = dataCurrentStage, parms = c("meanlog", "sdlog"), mle = fit$parameters)) + matrix <- try(.qcObservedVarcov(logdensity = lpdf, X = dataCurrentStage, parms = c("meanlog", "sdlog"), mle = fit$parameters)) # Gracefully handle confidence band computation failure if (jaspBase::isTryError(matrix)) { hasConfidenceBands <- FALSE @@ -2819,7 +2850,7 @@ processCapabilityStudies <- function(jaspResults, dataset, options) { shape <- as.numeric(fit_Weibull[["beta"]]) scale <- as.numeric(fit_Weibull[["theta"]]) lpdf <- quote(log(shape) - shape * log(scale) + shape * log(x) - (x/scale)^shape) - matrix <- try(mle.tools::observed.varcov(logdensity = lpdf, X = dataCurrentStage, parms = c("shape", "scale"), mle = c("shape" = shape, "scale" = scale))) + matrix <- try(.qcObservedVarcov(logdensity = lpdf, X = dataCurrentStage, parms = c("shape", "scale"), mle = c("shape" = shape, "scale" = scale))) # Gracefully handle confidence band computation failure if (jaspBase::isTryError(matrix)) { hasConfidenceBands <- FALSE diff --git a/R/variablesChartsSubgroups.R b/R/variablesChartsSubgroups.R index 6e4e669df..341a16a86 100644 --- a/R/variablesChartsSubgroups.R +++ b/R/variablesChartsSubgroups.R @@ -74,7 +74,7 @@ variablesChartsSubgroups <- function(jaspResults, dataset, options) { if ((!wideFormat && options[["subgroupSizeType"]] == "manual" && any(lapply(split(dataset[[stages]], ceiling(seq_along(dataset[[stages]])/options[["manualSubgroupSizeValue"]])), FUN = function(x)length(unique(x))) > 1)) || (!wideFormat && options[["subgroupSizeType"]] == "groupingVariable" && - any(table(dplyr::count_(dataset, vars = c(stages, subgroupVariable))[subgroupVariable]) > 1))) { + any(table(dplyr::count(dataset, dplyr::across(dplyr::all_of(c(stages, subgroupVariable))))[[subgroupVariable]]) > 1))) { plotNotes <- paste0(plotNotes, gettext("One or more subgroups are assigned to more than one stage, only first stage is considered.
")) } if (anyNA(dataset[[stages]])) { diff --git a/inst/help/attributesCharts.md b/inst/help/attributesCharts.md index c7e711b78..7012ff81a 100644 --- a/inst/help/attributesCharts.md +++ b/inst/help/attributesCharts.md @@ -60,8 +60,6 @@ In the case that the data of the individual and moving Range chart (X-mR chart) - Duncan, A.J. (1986), *Quality control and industrial statistics*, Richard D. Irwin, Inc. - Automotive Industry Action Group, *Statistical Process Control – Reference Manual* (July 2005, 2nd Edition) -- SKF Quality Techniques, Klerx, R., Dodson, B., and Dumont, D., QT 1 – *Process capability studies* (PUB GQ/P9 10347/1 EN – December 2021) -- SKF Quality Techniques, Dodson, B., Lynch, D., Weidenbacher, M., and Klerx, R., QT 2 – *Statistical process control* (PUB GQS/P9 18343 EN – April 2019) - International Organization for Standardization, *Control charts – Part 2: Shewhart control charts*, ISO 7870-2:2023 (E) diff --git a/inst/help/doeAnalysis.md b/inst/help/doeAnalysis.md index fbb0edb6d..134a443c5 100644 --- a/inst/help/doeAnalysis.md +++ b/inst/help/doeAnalysis.md @@ -18,27 +18,27 @@ A response surface design is an experimental framework used to optimize and unde ### Assignment box - Response: The measured outcome variable of the process under investigation. -- Discrete predictors: The columns corresponding to the discrete predictors in the design. -- Continuous predictors: The columns corresponding to the continuous predictors in the design. -- Covariates: The columns corresponding to the covariates in the design. The difference between a covariate and a continuous predictor is that the covariate will not be analysed for interaction effects and excluded from effect plots. -- Blocks: The columns corresponding to the blocks in the design. The difference between a block variable and a discrete predictor is that the blocks will not be analysed for interaction effects and excluded from effect plots. +- Discrete factors: The columns corresponding to the discrete factors in the design. +- Continuous factors: The columns corresponding to the continuous factors in the design. +- Covariates: The columns corresponding to the covariates in the design. The difference between a covariate and a continuous factor is that the covariate will not be analysed for interaction effects and excluded from effect plots. +- Blocks: The columns corresponding to the blocks in the design. The difference between a block variable and a discrete factor is that the blocks will not be analysed for interaction effects and excluded from effect plots. ## Analysis options ------- -### Predictor levels -For the ordering of contrasts and to identify the alpha points in a response surface design, the low and high levels of all predictors need to be specified. There are two options to handle this. +### Factor levels +For the ordering of contrasts and to identify the alpha points in a response surface design, the low and high levels of all factors need to be specified. There are two options to handle this. -- Automatically detect low/high: Attempts to automatically detect the low and high levels by taking the minimum and maximum for continuous predictors, and by ordering discrete predictors alphabetically. For response surface designs, this might recognize alpha values as low/high levels. In this case, manual specification is needed. +- Automatically detect low/high: Attempts to automatically detect the low and high levels by taking the minimum and maximum for continuous factors, and by ordering discrete factors alphabetically. For response surface designs, this might recognize alpha values as low/high levels. In this case, manual specification is needed. -- Manually specify low/high: Shows all predictors in the analysis to allow for manual specification of the low and high levels. +- Manually specify low/high: Shows all factors in the analysis to allow for manual specification of the low and high levels. ### Other analysis options -- Use alias names: Check to assign alias names to predictors. Useful when predictors have long names. +- Use alias names: Check to assign alias names to factors. Useful when factors have long names. - Show regression equation: Check to display the regression coefficients as an equation predicting the response. -- Display result in coded units: Check to display the results in coded units. This means, all predictor levels are standardized between -1 and 1. -- Show optimal response: Check to display the predictor levels yielding the optimal response. +- Display result in coded units: Check to display the results in coded units. This means, all factor levels are standardized between -1 and 1. +- Show optimal response: Check to display the factor levels yielding the optimal response. ## Model options ------- diff --git a/inst/help/doeResponseSurfaceMethodology.md b/inst/help/doeResponseSurfaceMethodology.md index 08169dd83..b57403c99 100644 --- a/inst/help/doeResponseSurfaceMethodology.md +++ b/inst/help/doeResponseSurfaceMethodology.md @@ -100,4 +100,4 @@ The Box-Behnken set-up consists of twelve "edge" points (shown as red dots) all ------- - Dodson, L., Dodson, M., and Klerx, R. (2010), *A study of the hierarchical ordering principle and the effect heredity principle in factorial experimental designs*, 10th Annual Transaction of ENBIS (12 16 September 2010, Antwerp). - Box, G.E.P., and Wilson, K.B. (1951), On the experimental attainment of optimum conditions. *Journal of the Royal Statistical Society 13*(1), 1-45. -- Dodson, B., Weidenbacher, M., Lynch D., and Klerx, R., QT 9 - Design and analysis of experiments. *SKF Quality Techniques*. (PUB GQS/P9 16083 EN - August 2015). +- Automotive Industry Action Group (July 2005), *Statistical process control (SPC) – Reference manual*, AIAG. diff --git a/inst/help/msaAttribute.md b/inst/help/msaAttribute.md index b0d167bd2..4d231f0c4 100644 --- a/inst/help/msaAttribute.md +++ b/inst/help/msaAttribute.md @@ -38,7 +38,6 @@ Data can be in the form of all observations in one column ("Single column") or a ## References ------- - Duncan, A.J. (1986), Quality control and industrial statistics, Richard D. Irwin, Inc., and Automotive Industry Action Group (July 2005), Statistical process control (SPC) – Reference manual, AIAG. -- Dodson, B., Lynch, D., Weidenbacher, M., & Klerx, R. (2009).*Statistical process control handbook*. SKF group. ## R Packages ------- - jaspGraphs diff --git a/inst/help/msaGaugeLinearity.md b/inst/help/msaGaugeLinearity.md index 18007e913..5202c0eeb 100644 --- a/inst/help/msaGaugeLinearity.md +++ b/inst/help/msaGaugeLinearity.md @@ -31,7 +31,6 @@ bias (matching between measurements and reference values) of a system. ## References ------- - Duncan, A.J. (1986), Quality control and industrial statistics, Richard D. Irwin, Inc., and Automotive Industry Action Group (July 2005), Statistical process control (SPC) – Reference manual, AIAG. -- Dodson, B., Lynch, D., Weidenbacher, M., & Klerx, R. (2009).*Statistical process control handbook*. SKF group. ## R Packages ------- diff --git a/inst/help/msaGaugeRR.md b/inst/help/msaGaugeRR.md index 4e67c16f9..18629bca4 100644 --- a/inst/help/msaGaugeRR.md +++ b/inst/help/msaGaugeRR.md @@ -17,13 +17,13 @@ Data can be in the form of all observations in one column ("Single column") or a ### Gauge r&R Method The method used in the analysis. -- ANOVA method: analysis is based on analysis of variance (ANOVA). +- Analysis of Variance method: analysis is based on analysis of variance (ANOVA). -### Options (ANOVA method) +### Options (Analysis of Variance method) #### Analysis options - Std.Deviation reference: either a historically known standard deviation (Historical process std.Deviation) or estimated from the data (Study std.Deviation). - Tolerance: include a value for tolerance. -- r&R table ANOVA method: options for the ANOVA table. +- r&R table Analysis of Variance method: options for the Analysis of Variance table. - Alpha interaction removal: value for alpha level. - Study Var. multiplier type: multiplier based on either Std.Deviation or Percent. - Study Var. multiplier value: value for the multiplier. @@ -44,14 +44,13 @@ The method used in the analysis. ## Output ------- -- ANOVA Table: Two-way anova tables with and without interactions for the input variables, repeatability, reproducibility, and total Gauge r&R. +- Analysis of Variance table: Two-way analysis of variance tables with and without interactions for the input variables, repeatability, reproducibility, and total Gauge r&R. - Gauge r&R Variance Components: variance and contribution in percentage of the input variables, repeatability, reproducibility, and total Gauge r&R. - Gauge Evaluation: the standard deviations, study variations, and percent of study variation and tolerance for input variables, repeatability, reproducibility, and total Gauge r&R. ## References ------- - Duncan, A.J. (1986), Quality control and industrial statistics, Richard D. Irwin, Inc., and Automotive Industry Action Group (July 2005), Statistical process control (SPC) – Reference manual, AIAG. -- Dodson, B., Lynch, D., Weidenbacher, M., & Klerx, R. (2009).*Statistical process control handbook*. SKF group. ## R Packages ------- diff --git a/inst/help/msaGaugeRRnonrep.md b/inst/help/msaGaugeRRnonrep.md index 8e9bf3300..a4e432163 100644 --- a/inst/help/msaGaugeRRnonrep.md +++ b/inst/help/msaGaugeRRnonrep.md @@ -37,7 +37,7 @@ Data can be in the form of all observations in one column ("Single column") or a ## Output ------- -- Gauge r&R (Nested): Nested ANOVA table for the input variables, repeatability, and total Gauge r&R. +- Gauge r&R (Nested): Nested Analysis of Variance table for the input variables, repeatability, reproducibility, and total Gauge r&R. - Gauge r&R Variance Components: variance and contribution in percentage of the input variables, repeatability, reproducibility, and total Gauge r&R. - Gauge Evaluation: the standard deviations, study variations, and percent of study variation and tolerance for input variables, repeatability, reproducibility, and total Gauge r&R. @@ -55,7 +55,6 @@ If you are looking at the %Contribution column, the corresponding standards are: ## References ------- - Duncan, A.J. (1986), Quality control and industrial statistics, Richard D. Irwin, Inc., and Automotive Industry Action Group (July 2005), Statistical process control (SPC) – Reference manual, AIAG. -- Dodson, B., Lynch, D., Weidenbacher, M., & Klerx, R. (2009).*Statistical process control handbook*. SKF group. ## R Packages ------- diff --git a/inst/help/msaTestRetest.md b/inst/help/msaTestRetest.md index a64ebb4bc..6632fb27c 100644 --- a/inst/help/msaTestRetest.md +++ b/inst/help/msaTestRetest.md @@ -38,7 +38,6 @@ Data can be in the form of all observations in one column ("Single column") or a ## References ------- - Duncan, A.J. (1986), Quality control and industrial statistics, Richard D. Irwin, Inc., and Automotive Industry Action Group (July 2005), Statistical process control (SPC) – Reference manual, AIAG. -- Dodson, B., Lynch, D., Weidenbacher, M., & Klerx, R. (2009).*Statistical process control handbook*. SKF group. ## R Packages ------- diff --git a/inst/help/msaType1Gauge.md b/inst/help/msaType1Gauge.md index 9f255d4e1..d0f01e79b 100644 --- a/inst/help/msaType1Gauge.md +++ b/inst/help/msaType1Gauge.md @@ -39,7 +39,6 @@ Type 1 Gauge is performed before a Gauge r & R study to determine the measuremen ## References ------- - Duncan, A.J. (1986), Quality control and industrial statistics, Richard D. Irwin, Inc., and Automotive Industry Action Group (July 2005), Statistical process control (SPC) – Reference manual, AIAG. -- Dodson, B., Lynch, D., Weidenbacher, M., & Klerx, R. (2009).*Statistical process control handbook*. SKF group. ## R Packages ------- diff --git a/inst/help/processCapabilityStudies.md b/inst/help/processCapabilityStudies.md index c03b835a2..f1d416d53 100644 --- a/inst/help/processCapabilityStudies.md +++ b/inst/help/processCapabilityStudies.md @@ -126,10 +126,8 @@ The size of the subgroups is relevant for the calculation of the process varianc ## References ------- 1. Automotive Industry Action Group, *Statistical Process Control - Reference Manual* (July 2005, 2nd Edition) -2. SKF Quality Techniques, Klerx, R., Dodson, B., and Dumont, D., QT 1 - *Process capability studies*. (PUB GQ/P9 10347/1 EN - December 2021) -3. SKF Quality Techniques, Dodson, B., Lynch, D., Weidenbacher, M., and Klerx, R. (), *QT 2 - Statistical process control*, (PUB GQS/P9 18343 EN - April 2019) -4. Yeo, I. K., & Johnson, R. A. (2000). A new family of power transformations to improve normality or symmetry. Biometrika, 87(4), 954-959. -5. Chou, Y. M., Polansky, A. M., & Mason, R. L. (1998). Transforming non-normal data to normality in statistical process control. Journal of Quality Technology, 30(2), 133-141. +2. Yeo, I. K., & Johnson, R. A. (2000). A new family of power transformations to improve normality or symmetry. Biometrika, 87(4), 954-959. +3. Chou, Y. M., Polansky, A. M., & Mason, R. L. (1998). Transforming non-normal data to normality in statistical process control. Journal of Quality Technology, 30(2), 133-141. ## R Packages @@ -141,7 +139,6 @@ The size of the subgroups is relevant for the calculation of the process varianc - FAdist - goftest - fitdistrplus -- mle.tools - tidyr - tibble - EnvStats diff --git a/inst/help/timeWeightedCharts.md b/inst/help/timeWeightedCharts.md index d88371934..35a03cddf 100644 --- a/inst/help/timeWeightedCharts.md +++ b/inst/help/timeWeightedCharts.md @@ -71,7 +71,7 @@ Graphical display for the tabular CUSUM. These charts are sometimes called CUSUM -------- - Page, E.S. (1954), *Continuous inspection schemes*, Biometrika, Vol. 41, No. 1-2, pp. 100-115 - Roberts, S.W. (1959), *Control chart tests based on geometric moving averages*, Technometrics, Vol. 1, No. 3, pp. 239-250 -- SKF Quality Techniques, Dodson, B., Lynch, D., Weidenbacher, M., and Klerx, R., *QT 2 – Statistical process control* (PUB GQS/P9 18343 EN – April 2019) +- Automotive Industry Action Group (July 2005), *Statistical process control (SPC) – Reference manual*, AIAG. - International Organization for Standardization, *Control charts – Part 4: Cumulative sum charts*, ISO 7870-4:2021 (E) - Montgomery D. C. (2013), *Introduction to statistical quality control (7th Ed.)*, John Wiley & Sons, Inc , Hoboken (NJ) diff --git a/inst/help/variablesChartsIndividuals.md b/inst/help/variablesChartsIndividuals.md index 8307abda3..ef6f9b75a 100644 --- a/inst/help/variablesChartsIndividuals.md +++ b/inst/help/variablesChartsIndividuals.md @@ -87,8 +87,6 @@ Only Test 1, Test 2, Test 3 and Test 8 will be applied to the moving range chart ------- - Duncan, A.J. (1986), *Quality control and industrial statistics*, Richard D. Irwin, Inc. - Automotive Industry Action Group, *Statistical Process Control – Reference Manual* (July 2005, 2nd Edition) -- SKF Quality Techniques, Klerx, R., Dodson, B., and Dumont, D., *QT 1 – Process capability studies*, (PUB GQ/P9 10347/1 EN – December 2021) -- SKF Quality Techniques, Dodson, B., Lynch, D., Weidenbacher, M., & and Klerx, R. (2009).), *QT 2 – Statistical process control*, (PUB GQS/P9 18343 EN – April 2019) ## R Packages diff --git a/inst/help/variablesChartsSubgroups.md b/inst/help/variablesChartsSubgroups.md index fb5ffca3a..bbc65a4bd 100644 --- a/inst/help/variablesChartsSubgroups.md +++ b/inst/help/variablesChartsSubgroups.md @@ -82,7 +82,6 @@ Select manually which tests you want to apply and modify them as desired: ## References ------- - Duncan, A.J. (1986), Quality control and industrial statistics, Richard D. Irwin, Inc., and Automotive Industry Action Group (July 2005), Statistical process control (SPC) - Reference manual, AIAG -- Dodson, B., Lynch, D., Weidenbacher, M., & Klerx, R. (2009).*Statistical process control handbook*. SKF group. ## R Packages @@ -93,4 +92,3 @@ Select manually which tests you want to apply and modify them as desired: - ggrepel - tidyr - tibble -- mle.tools diff --git a/inst/qml/doeFactorial.qml b/inst/qml/doeFactorial.qml index d8fb76158..1250440ad 100644 --- a/inst/qml/doeFactorial.qml +++ b/inst/qml/doeFactorial.qml @@ -478,6 +478,7 @@ Form max: 8 } + /* IntegerField { name: "repetitions" @@ -486,6 +487,7 @@ Form min: 0 max: 10 } + */ } } } diff --git a/inst/qml/msaGaugeRR.qml b/inst/qml/msaGaugeRR.qml index 7ff585962..83c1bf7b9 100644 --- a/inst/qml/msaGaugeRR.qml +++ b/inst/qml/msaGaugeRR.qml @@ -178,7 +178,7 @@ Form CheckBox { name: "anova" - label: qsTr("r&R ANOVA table") + label: qsTr("r&R Analysis of Variance table") checked: true DropDown @@ -251,7 +251,7 @@ Form CheckBox { name: "xBarChart" - label: qsTr("Average chart bys operator") + label: qsTr("Average chart by operator") enabled: !type3.checked } diff --git a/inst/qml/msaGaugeRRnonrep.qml b/inst/qml/msaGaugeRRnonrep.qml index 45c784147..3b4b4f266 100644 --- a/inst/qml/msaGaugeRRnonrep.qml +++ b/inst/qml/msaGaugeRRnonrep.qml @@ -149,7 +149,7 @@ Form CheckBox { name: "anova" - label: qsTr("r&R ANOVA table") + label: qsTr("r&R Analysis of Variance table") checked: true DropDown diff --git a/renv.lock b/renv.lock index 4ea2644c7..b9e533e88 100644 --- a/renv.lock +++ b/renv.lock @@ -19,11 +19,11 @@ "Packages": { "BayesFactor": { "Package": "BayesFactor", - "Version": "0.9.12-4.7", + "Version": "0.9.12-4.8", "Source": "Repository", "Type": "Package", "Title": "Computation of Bayes Factors for Common Designs", - "Date": "2024-01-23", + "Date": "2026-03-08", "Authors@R": "c(person(\"Richard D.\", \"Morey\", role = c(\"aut\", \"cre\", \"cph\"), email = \"richarddmorey@gmail.com\"), person(\"Jeffrey N.\", \"Rouder\", role = \"aut\", email = \"jrouder@uci.edu\"), person(\"Tahira\", \"Jamil\", role = c(\"ctb\",\"cph\"), email = \"tahjamil@gmail.com\"), person(\"Simon\", \"Urbanek\", role = c(\"ctb\", \"cph\"), email = \"simon.urbanek@r-project.org\"), person(\"Karl\", \"Forner\", role = c(\"ctb\", \"cph\"), email = \"karl.forner@gmail.com\"), person(\"Alexander\", \"Ly\", role = c(\"ctb\", \"cph\"), email = \"Alexander.Ly.NL@gmail.com\"))", "Description": "A suite of functions for computing various Bayes factors for simple designs, including contingency tables, one- and two-sample designs, one-way designs, general ANOVA designs, and linear regression.", "License": "GPL-2", @@ -40,7 +40,7 @@ "utils", "graphics", "MatrixModels", - "Rcpp (>= 0.11.2)", + "Rcpp (>= 1.1.1)", "methods", "hypergeo" ], @@ -60,15 +60,15 @@ "BugReports": "https://github.com/richarddmorey/BayesFactor/issues", "LazyLoad": "yes", "LinkingTo": [ - "Rcpp (>= 0.11.2)", + "Rcpp (>= 1.1.1)", "RcppEigen (>= 0.3.2.2.0)" ], - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.3", "Encoding": "UTF-8", "NeedsCompilation": "yes", "Author": "Richard D. Morey [aut, cre, cph], Jeffrey N. Rouder [aut], Tahira Jamil [ctb, cph], Simon Urbanek [ctb, cph], Karl Forner [ctb, cph], Alexander Ly [ctb, cph]", "Maintainer": "Richard D. Morey ", - "Repository": "CRAN" + "Repository": "RSPM" }, "Cairo": { "Package": "Cairo", @@ -100,10 +100,10 @@ }, "DBI": { "Package": "DBI", - "Version": "1.2.3", + "Version": "1.3.0", "Source": "Repository", "Title": "R Database Interface", - "Date": "2024-06-02", + "Date": "2026-02-11", "Authors@R": "c( person(\"R Special Interest Group on Databases (R-SIG-DB)\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\") )", "Description": "A database interface definition for communication between R and relational database management systems. All classes in this package are virtual and need to be extended by the various R/DBMS implementations.", "License": "LGPL (>= 2.1)", @@ -116,8 +116,9 @@ "Suggests": [ "arrow", "blob", + "callr", "covr", - "DBItest", + "DBItest (>= 1.8.2)", "dbplyr", "downlit", "dplyr", @@ -126,6 +127,8 @@ "knitr", "magrittr", "nanoarrow (>= 0.3.0.1)", + "otel", + "otelsdk", "RMariaDB", "rmarkdown", "rprojroot", @@ -138,14 +141,14 @@ "Config/autostyle/scope": "line_breaks", "Config/autostyle/strict": "false", "Config/Needs/check": "r-dbi/DBItest", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", "Config/Needs/website": "r-dbi/DBItest, r-dbi/dbitemplate, adbi, AzureKusto, bigrquery, DatabaseConnector, dittodb, duckdb, implyr, lazysf, odbc, pool, RAthena, IMSMWU/RClickhouse, RH2, RJDBC, RMariaDB, RMySQL, RPostgres, RPostgreSQL, RPresto, RSQLite, sergeant, sparklyr, withr", "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3.9000", "NeedsCompilation": "no", - "Author": "R Special Interest Group on Databases (R-SIG-DB) [aut], Hadley Wickham [aut], Kirill Müller [aut, cre] (), R Consortium [fnd]", + "Author": "R Special Interest Group on Databases (R-SIG-DB) [aut], Hadley Wickham [aut], Kirill Müller [aut, cre] (ORCID: ), R Consortium [fnd]", "Maintainer": "Kirill Müller ", - "Repository": "CRAN" + "Repository": "RSPM" }, "Deriv": { "Package": "Deriv", @@ -284,7 +287,7 @@ }, "FrF2": { "Package": "FrF2", - "Version": "2.3-4", + "Version": "2.3-5", "Source": "Repository", "Title": "Fractional Factorial Designs with 2-Level Factors", "Depends": [ @@ -303,7 +306,7 @@ "BsMD", "DoE.wrapper" ], - "Date": "2025-04-16", + "Date": "2026-05-25", "Authors@R": "person(\"Ulrike\", \"Groemping\", role = c(\"aut\", \"cre\"), email = \"ulrike.groemping@bht-berlin.de\")", "Description": "Regular and non-regular Fractional Factorial 2-level designs can be created. Furthermore, analysis tools for Fractional Factorial designs with 2-level factors are offered (main effects and interaction plots for all factors simultaneously, cube plot for looking at the simultaneous effects of three factors, full or half normal plot, alias structure in a more readable format than with the built-in function alias).", "License": "GPL (>= 2)", @@ -317,20 +320,20 @@ }, "GPArotation": { "Package": "GPArotation", - "Version": "2025.3-1", + "Version": "2026.4-1", "Source": "Repository", "Title": "Gradient Projection Factor Rotation", - "Authors@R": "c( person(\"Coen\", \"Bernaards\", email = \"cab.gparotation@gmail.com\", role = c(\"aut\",\"cre\")), person(\"Paul\", \"Gilbert\", email = \"pgilbert.ttv9z@ncf.ca\", role = \"aut\"), person(\"Robert\", \"Jennrich\", role = \"aut\") )", + "Authors@R": "c( person(\"Coen\", \"Bernaards\", email = \"cab.gparotation@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Paul\", \"Gilbert\", role = \"aut\"), person(\"Robert\", \"Jennrich\", role = \"aut\") )", "Depends": [ - "R (>= 2.0.0)" + "R (>= 3.5.0)" ], - "Description": "Gradient Projection Algorithms for Factor Rotation. For details see ?GPArotation. When using this package, please cite Bernaards and Jennrich (2005) 'Gradient Projection Algorithms and Software for Arbitrary Rotation Criteria in Factor Analysis'.", - "LazyData": "yes", + "Description": "Gradient projection algorithms for orthogonal and oblique rotation of factor loadings matrices in factor analysis. Implements a comprehensive set of rotation criteria including quartimax, quartimin, oblimin, geomin, simplimax, the Crawford-Ferguson family, and target rotation, among others. Supports multiple random starts. For details see Bernaards and Jennrich (2005) .", + "License": "GPL (>= 2)", + "URL": "https://cran.r-project.org/package=GPArotation", "Imports": [ "stats" ], - "License": "GPL (>= 2)", - "URL": "https://optimizer.r-forge.r-project.org/GPArotation_www/", + "LazyData": "yes", "NeedsCompilation": "no", "Author": "Coen Bernaards [aut, cre], Paul Gilbert [aut], Robert Jennrich [aut]", "Maintainer": "Coen Bernaards ", @@ -448,10 +451,10 @@ }, "Matrix": { "Package": "Matrix", - "Version": "1.7-4", + "Version": "1.7-5", "Source": "Repository", "VersionNote": "do also bump src/version.h, inst/include/Matrix/version.h", - "Date": "2025-08-27", + "Date": "2026-03-20", "Priority": "recommended", "Title": "Sparse and Dense Matrix Classes and Methods", "Description": "A rich hierarchy of sparse and dense matrix classes, including general, symmetric, triangular, and diagonal matrices with numeric, logical, or pattern entries. Efficient methods for operating on such matrices, often wrapping the 'BLAS', 'LAPACK', and 'SuiteSparse' libraries.", @@ -489,7 +492,7 @@ "NeedsCompilation": "yes", "Author": "Douglas Bates [aut] (ORCID: ), Martin Maechler [aut, cre] (ORCID: ), Mikael Jagan [aut] (ORCID: ), Timothy A. Davis [ctb] (ORCID: , SuiteSparse libraries, collaborators listed in dir(system.file(\"doc\", \"SuiteSparse\", package=\"Matrix\"), pattern=\"License\", full.names=TRUE, recursive=TRUE)), George Karypis [ctb] (ORCID: , METIS library, Copyright: Regents of the University of Minnesota), Jason Riedy [ctb] (ORCID: , GNU Octave's condest() and onenormest(), Copyright: Regents of the University of California), Jens Oehlschlägel [ctb] (initial nearPD()), R Core Team [ctb] (ROR: , base R's matrix implementation)", "Maintainer": "Martin Maechler ", - "Repository": "CRAN" + "Repository": "RSPM" }, "MatrixModels": { "Package": "MatrixModels", @@ -566,12 +569,12 @@ }, "RSQLite": { "Package": "RSQLite", - "Version": "2.4.6", + "Version": "3.53.1", "Source": "Repository", "Title": "SQLite Interface for R", - "Date": "2026-02-05", + "Date": "2026-05-22", "Authors@R": "c( person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(c(\"David\", \"A.\"), \"James\", role = \"aut\"), person(\"Seth\", \"Falcon\", role = \"aut\"), person(\"D. Richard\", \"Hipp\", role = \"ctb\", comment = \"for the included SQLite sources\"), person(\"Dan\", \"Kennedy\", role = \"ctb\", comment = \"for the included SQLite sources\"), person(\"Joe\", \"Mistachkin\", role = \"ctb\", comment = \"for the included SQLite sources\"), person(, \"SQLite Authors\", role = \"ctb\", comment = \"for the included SQLite sources\"), person(\"Liam\", \"Healy\", role = \"ctb\", comment = \"for the included SQLite sources\"), person(\"R Consortium\", role = \"fnd\"), person(, \"RStudio\", role = \"cph\") )", - "Description": "Embeds the SQLite database engine in R and provides an interface compliant with the DBI package. The source for the SQLite engine (version 3.51.2) and for various extensions is included. System libraries will never be consulted because this package relies on static linking for the plugins it includes; this also ensures a consistent experience across all installations.", + "Description": "Embeds the SQLite database engine in R and provides an interface compliant with the DBI package. The source for the SQLite engine and for various extensions is included. System libraries will never be consulted because this package relies on static linking for the plugins it includes; this also ensures a consistent experience across all installations.", "License": "LGPL (>= 2.1)", "URL": "https://rsqlite.r-dbi.org, https://github.com/r-dbi/RSQLite", "BugReports": "https://github.com/r-dbi/RSQLite/issues", @@ -612,8 +615,8 @@ "Config/autostyle/strict": "false", "Config/testthat/edition": "3", "Encoding": "UTF-8", - "RoxygenNote": "7.3.3.9000", - "Collate": "'SQLiteConnection.R' 'SQLKeywords_SQLiteConnection.R' 'SQLiteDriver.R' 'SQLite.R' 'SQLiteResult.R' 'coerce.R' 'compatRowNames.R' 'copy.R' 'cpp11.R' 'datasetsDb.R' 'dbAppendTable_SQLiteConnection.R' 'dbBeginTransaction.R' 'dbBegin_SQLiteConnection.R' 'dbBind_SQLiteResult.R' 'dbClearResult_SQLiteResult.R' 'dbColumnInfo_SQLiteResult.R' 'dbCommit_SQLiteConnection.R' 'dbConnect_SQLiteConnection.R' 'dbConnect_SQLiteDriver.R' 'dbDataType_SQLiteConnection.R' 'dbDataType_SQLiteDriver.R' 'dbDisconnect_SQLiteConnection.R' 'dbExistsTable_SQLiteConnection_Id.R' 'dbExistsTable_SQLiteConnection_character.R' 'dbFetch_SQLiteResult.R' 'dbGetException_SQLiteConnection.R' 'dbGetInfo_SQLiteConnection.R' 'dbGetInfo_SQLiteDriver.R' 'dbGetPreparedQuery.R' 'dbGetPreparedQuery_SQLiteConnection_character_data.frame.R' 'dbGetRowCount_SQLiteResult.R' 'dbGetRowsAffected_SQLiteResult.R' 'dbGetStatement_SQLiteResult.R' 'dbHasCompleted_SQLiteResult.R' 'dbIsValid_SQLiteConnection.R' 'dbIsValid_SQLiteDriver.R' 'dbIsValid_SQLiteResult.R' 'dbListResults_SQLiteConnection.R' 'dbListTables_SQLiteConnection.R' 'dbQuoteIdentifier_SQLiteConnection_SQL.R' 'dbQuoteIdentifier_SQLiteConnection_character.R' 'dbReadTable_SQLiteConnection_character.R' 'dbRemoveTable_SQLiteConnection_character.R' 'dbRollback_SQLiteConnection.R' 'dbSendPreparedQuery.R' 'dbSendPreparedQuery_SQLiteConnection_character_data.frame.R' 'dbSendQuery_SQLiteConnection_character.R' 'dbUnloadDriver_SQLiteDriver.R' 'dbUnquoteIdentifier_SQLiteConnection_SQL.R' 'dbWriteTable_SQLiteConnection_character_character.R' 'dbWriteTable_SQLiteConnection_character_data.frame.R' 'db_bind.R' 'deprecated.R' 'export.R' 'fetch_SQLiteResult.R' 'import-standalone-check_suggested.R' 'import-standalone-purrr.R' 'initExtension.R' 'initRegExp.R' 'isSQLKeyword_SQLiteConnection_character.R' 'make.db.names_SQLiteConnection_character.R' 'pkgconfig.R' 'show_SQLiteConnection.R' 'sqlData_SQLiteConnection.R' 'table.R' 'transactions.R' 'utils.R' 'version.R' 'zzz.R'", + "Collate": "'SQLiteConnection.R' 'SQLKeywords_SQLiteConnection.R' 'SQLiteDriver.R' 'SQLite.R' 'SQLiteResult.R' 'coerce.R' 'compatRowNames.R' 'copy.R' 'cpp11.R' 'datasetsDb.R' 'dbAppendTable_SQLiteConnection.R' 'dbBeginTransaction.R' 'dbBegin_SQLiteConnection.R' 'dbBind_SQLiteResult.R' 'dbClearResult_SQLiteResult.R' 'dbColumnInfo_SQLiteResult.R' 'dbCommit_SQLiteConnection.R' 'dbConnect_SQLiteConnection.R' 'dbConnect_SQLiteDriver.R' 'dbDataType_SQLiteConnection.R' 'dbDataType_SQLiteDriver.R' 'dbDisconnect_SQLiteConnection.R' 'dbExistsTable_SQLiteConnection_Id.R' 'dbExistsTable_SQLiteConnection_character.R' 'dbFetch_SQLiteResult.R' 'dbGetException_SQLiteConnection.R' 'dbGetInfo_SQLiteConnection.R' 'dbGetInfo_SQLiteDriver.R' 'dbGetPreparedQuery.R' 'dbGetPreparedQuery_SQLiteConnection_character_data.frame.R' 'dbGetRowCount_SQLiteResult.R' 'dbGetRowsAffected_SQLiteResult.R' 'dbGetStatement_SQLiteResult.R' 'dbHasCompleted_SQLiteResult.R' 'dbIsValid_SQLiteConnection.R' 'dbIsValid_SQLiteDriver.R' 'dbIsValid_SQLiteResult.R' 'dbListObjects_SQLiteConnection.R' 'dbListResults_SQLiteConnection.R' 'dbListTables_SQLiteConnection.R' 'dbQuoteIdentifier_SQLiteConnection_SQL.R' 'dbQuoteIdentifier_SQLiteConnection_character.R' 'dbReadTable_SQLiteConnection_character.R' 'dbRemoveTable_SQLiteConnection_character.R' 'dbRollback_SQLiteConnection.R' 'dbSendPreparedQuery.R' 'dbSendPreparedQuery_SQLiteConnection_character_data.frame.R' 'dbSendQuery_SQLiteConnection_character.R' 'dbUnloadDriver_SQLiteDriver.R' 'dbUnquoteIdentifier_SQLiteConnection_SQL.R' 'dbWriteTable_SQLiteConnection_character_character.R' 'dbWriteTable_SQLiteConnection_character_data.frame.R' 'db_bind.R' 'deprecated.R' 'export.R' 'fetch_SQLiteResult.R' 'import-standalone-check_suggested.R' 'import-standalone-purrr.R' 'initExtension.R' 'initRegExp.R' 'isSQLKeyword_SQLiteConnection_character.R' 'make.db.names_SQLiteConnection_character.R' 'pkgconfig.R' 'show_SQLiteConnection.R' 'sqlData_SQLiteConnection.R' 'table.R' 'transactions.R' 'utils.R' 'version.R' 'zzz.R'", + "Config/roxygen2/version": "8.0.0.9000", "NeedsCompilation": "yes", "Author": "Kirill Müller [aut, cre] (ORCID: ), Hadley Wickham [aut], David A. James [aut], Seth Falcon [aut], D. Richard Hipp [ctb] (for the included SQLite sources), Dan Kennedy [ctb] (for the included SQLite sources), Joe Mistachkin [ctb] (for the included SQLite sources), SQLite Authors [ctb] (for the included SQLite sources), Liam Healy [ctb] (for the included SQLite sources), R Consortium [fnd], RStudio [cph]", "Maintainer": "Kirill Müller ", @@ -621,10 +624,10 @@ }, "Rcpp": { "Package": "Rcpp", - "Version": "1.1.1", + "Version": "1.1.1-1.1", "Source": "Repository", "Title": "Seamless R and C++ Integration", - "Date": "2026-01-07", + "Date": "2026-04-19", "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"JJ\", \"Allaire\", role = \"aut\", comment = c(ORCID = \"0000-0003-0174-9868\")), person(\"Kevin\", \"Ushey\", role = \"aut\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Qiang\", \"Kou\", role = \"aut\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Nathan\", \"Russell\", role = \"aut\"), person(\"Iñaki\", \"Ucar\", role = \"aut\", comment = c(ORCID = \"0000-0001-6403-5550\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"John\", \"Chambers\", role = \"aut\"))", "Description": "The 'Rcpp' package provides R functions as well as C++ classes which offer a seamless integration of R and C++. Many R data types and objects can be mapped back and forth to C++ equivalents which facilitates both writing of new code as well as easier integration of third-party libraries. Documentation about 'Rcpp' is provided by several vignettes included in this package, via the 'Rcpp Gallery' site at , the paper by Eddelbuettel and Francois (2011, ), the book by Eddelbuettel (2013, ) and the paper by Eddelbuettel and Balamuta (2018, ); see 'citation(\"Rcpp\")' for details.", "Depends": [ @@ -654,13 +657,13 @@ }, "RcppArmadillo": { "Package": "RcppArmadillo", - "Version": "15.2.3-1", + "Version": "15.2.6-1", "Source": "Repository", "Type": "Package", "Title": "'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library", - "Date": "2025-12-16", + "Date": "2026-04-20", "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Binxiang\", \"Ni\", role = \"aut\"), person(\"Conrad\", \"Sanderson\", role = \"aut\", comment = c(ORCID = \"0000-0002-0049-4501\")))", - "Description": "'Armadillo' is a templated C++ linear algebra library aiming towards a good balance between speed and ease of use. It provides high-level syntax and functionality deliberately similar to Matlab. It is useful for algorithm development directly in C++, or quick conversion of research code into production environments. It provides efficient classes for vectors, matrices and cubes where dense and sparse matrices are supported. Integer, floating point and complex numbers are supported. A sophisticated expression evaluator (based on template meta-programming) automatically combines several operations to increase speed and efficiency. Dynamic evaluation automatically chooses optimal code paths based on detected matrix structures. Matrix decompositions are provided through integration with LAPACK, or one of its high performance drop-in replacements (such as 'MKL' or 'OpenBLAS'). It can automatically use 'OpenMP' multi-threading (parallelisation) to speed up computationally expensive operations. . The 'RcppArmadillo' package includes the header files from the 'Armadillo' library; users do not need to install 'Armadillo' itself in order to use 'RcppArmadillo'. Starting from release 15.0.0, the minimum compilation standard is C++14 so 'Armadillo' version 14.6.3 is included as a fallback when an R package forces the C++11 standard. Package authors should set a '#define' to select the 'current' version, or select the 'legacy' version (also chosen as default) if they must. See 'GitHub issue #475' for details. . Since release 7.800.0, 'Armadillo' is licensed under Apache License 2; previous releases were under licensed as MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that; 'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.", + "Description": "'Armadillo' is a templated C++ linear algebra library aiming towards a good balance between speed and ease of use. It provides high-level syntax and functionality deliberately similar to Matlab. It is useful for algorithm development directly in C++, or quick conversion of research code into production environments. It provides efficient classes for vectors, matrices and cubes where dense and sparse matrices are supported. Integer, floating point and complex numbers are supported. A sophisticated expression evaluator (based on template meta-programming) automatically combines several operations to increase speed and efficiency. Dynamic evaluation automatically chooses optimal code paths based on detected matrix structures. Matrix decompositions are provided through integration with LAPACK, or one of its high performance drop-in replacements (such as 'MKL' or 'OpenBLAS'). It can automatically use 'OpenMP' multi-threading (parallelisation) to speed up computationally expensive operations. . The 'RcppArmadillo' package includes the header files from the 'Armadillo' library; users do not need to install 'Armadillo' itself in order to use 'RcppArmadillo'. Starting from release 15.0.0, the minimum compilation standard is C++14. . Since release 7.800.0, 'Armadillo' is licensed under Apache License 2; previous releases were under licensed as MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that; 'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.", "License": "GPL (>= 2)", "LazyLoad": "yes", "Depends": [ @@ -670,7 +673,7 @@ "Rcpp" ], "Imports": [ - "Rcpp (>= 1.0.12)", + "Rcpp (>= 1.1.1)", "stats", "utils", "methods" @@ -685,10 +688,12 @@ "URL": "https://github.com/RcppCore/RcppArmadillo, https://dirk.eddelbuettel.com/code/rcpp.armadillo.html", "BugReports": "https://github.com/RcppCore/RcppArmadillo/issues", "RoxygenNote": "6.0.1", + "Encoding": "UTF-8", + "VignetteBuilder": "Rcpp", "NeedsCompilation": "yes", "Author": "Dirk Eddelbuettel [aut, cre] (ORCID: ), Romain Francois [aut] (ORCID: ), Doug Bates [aut] (ORCID: ), Binxiang Ni [aut], Conrad Sanderson [aut] (ORCID: )", "Maintainer": "Dirk Eddelbuettel ", - "Repository": "CRAN" + "Repository": "RSPM" }, "RcppEigen": { "Package": "RcppEigen", @@ -729,13 +734,13 @@ }, "Rdpack": { "Package": "Rdpack", - "Version": "2.6.4", + "Version": "2.6.6", "Source": "Repository", "Type": "Package", "Title": "Update and Manipulate Rd Documentation Objects", "Authors@R": "c( person(given = c(\"Georgi\", \"N.\"), family = \"Boshnakov\", role = c(\"aut\", \"cre\"), email = \"georgi.boshnakov@manchester.ac.uk\", comment = c(ORCID = \"0000-0003-2839-346X\")), person(given = \"Duncan\", family = \"Murdoch\", role = \"ctb\", email = \"murdoch.duncan@gmail.com\") )", "Description": "Functions for manipulation of R documentation objects, including functions reprompt() and ereprompt() for updating 'Rd' documentation for functions, methods and classes; 'Rd' macros for citations and import of references from 'bibtex' files for use in 'Rd' files and 'roxygen2' comments; 'Rd' macros for evaluating and inserting snippets of 'R' code and the results of its evaluation or creating graphics on the fly; and many functions for manipulation of references and Rd files.", - "URL": "https://geobosh.github.io/Rdpack/ (doc), https://github.com/GeoBosh/Rdpack (devel)", + "URL": "https://geobosh.github.io/Rdpack/ (doc), https://CRAN.R-project.org/package=Rdpack", "BugReports": "https://github.com/GeoBosh/Rdpack/issues", "Depends": [ "R (>= 2.15.0)", @@ -744,7 +749,7 @@ "Imports": [ "tools", "utils", - "rbibutils (>= 1.3)" + "rbibutils (> 2.4)" ], "Suggests": [ "grDevices", @@ -755,11 +760,12 @@ ], "License": "GPL (>= 2)", "LazyLoad": "yes", + "Encoding": "UTF-8", "RoxygenNote": "7.1.1", "NeedsCompilation": "no", - "Author": "Georgi N. Boshnakov [aut, cre] (), Duncan Murdoch [ctb]", + "Author": "Georgi N. Boshnakov [aut, cre] (ORCID: ), Duncan Murdoch [ctb]", "Maintainer": "Georgi N. Boshnakov ", - "Repository": "CRAN" + "Repository": "RSPM" }, "Rspc": { "Package": "Rspc", @@ -788,7 +794,7 @@ }, "S7": { "Package": "S7", - "Version": "0.2.1", + "Version": "0.2.2", "Source": "Repository", "Title": "An Object Oriented System Meant to Become a Successor to S3 and S4", "Authors@R": "c( person(\"Object-Oriented Programming Working Group\", role = \"cph\"), person(\"Davis\", \"Vaughan\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Tomasz\", \"Kalinowski\", role = \"aut\"), person(\"Will\", \"Landau\", role = \"aut\"), person(\"Michael\", \"Lawrence\", role = \"aut\"), person(\"Martin\", \"Maechler\", role = \"aut\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Luke\", \"Tierney\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")) )", @@ -889,36 +895,6 @@ "Maintainer": "Torsten Hothorn ", "Repository": "CRAN" }, - "TTR": { - "Package": "TTR", - "Version": "0.24.4", - "Source": "Repository", - "Type": "Package", - "Title": "Technical Trading Rules", - "Authors@R": "c( person(given=\"Joshua\", family=\"Ulrich\", role=c(\"cre\",\"aut\"), email=\"josh.m.ulrich@gmail.com\"), person(given=c(\"Ethan\",\"B.\"), family=\"Smith\", role=\"ctb\") )", - "Imports": [ - "xts (>= 0.10-0)", - "zoo", - "curl" - ], - "LinkingTo": [ - "xts" - ], - "Enhances": [ - "quantmod" - ], - "Suggests": [ - "RUnit" - ], - "Description": "A collection of over 50 technical indicators for creating technical trading rules. The package also provides fast implementations of common rolling-window functions, and several volatility calculations.", - "License": "GPL (>= 2)", - "URL": "https://github.com/joshuaulrich/TTR", - "BugReports": "https://github.com/joshuaulrich/TTR/issues", - "NeedsCompilation": "yes", - "Author": "Joshua Ulrich [cre, aut], Ethan B. Smith [ctb]", - "Maintainer": "Joshua Ulrich ", - "Repository": "CRAN" - }, "abind": { "Package": "abind", "Version": "1.4-8", @@ -942,7 +918,7 @@ }, "archive": { "Package": "archive", - "Version": "1.1.12.1", + "Version": "1.1.13", "Source": "Repository", "Title": "Multi-Format Archive and Compression Support", "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Ondrej\", \"Holy\", role = \"cph\", comment = \"archive_write_add_filter implementation\"), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )", @@ -951,7 +927,7 @@ "URL": "https://archive.r-lib.org/, https://github.com/r-lib/archive", "BugReports": "https://github.com/r-lib/archive/issues", "Depends": [ - "R (>= 3.6.0)" + "R (>= 4.0.0)" ], "Imports": [ "cli", @@ -970,11 +946,12 @@ "Encoding": "UTF-8", "RoxygenNote": "7.2.1.9000", "SystemRequirements": "libarchive: libarchive-dev (deb), libarchive-devel (rpm), libarchive (homebrew), libarchive_dev (csw)", + "Config/Needs/website": "tidyverse/tidytemplate", "Biarch": "true", "NeedsCompilation": "yes", "Author": "Jim Hester [aut] (ORCID: ), Gábor Csárdi [aut, cre], Ondrej Holy [cph] (archive_write_add_filter implementation), RStudio [cph, fnd]", "Maintainer": "Gábor Csárdi ", - "Repository": "CRAN" + "Repository": "RSPM" }, "askpass": { "Package": "askpass", @@ -1025,7 +1002,7 @@ }, "backports": { "Package": "backports", - "Version": "1.5.0", + "Version": "1.5.1", "Source": "Repository", "Type": "Package", "Title": "Reimplementations of Functions Introduced Since R-3.0.0", @@ -1041,16 +1018,17 @@ "R (>= 3.0.0)" ], "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", - "Author": "Michel Lang [cre, aut] (), Duncan Murdoch [aut], R Core Team [aut]", - "Repository": "CRAN" + "RoxygenNote": "7.3.3", + "Author": "Michel Lang [cre, aut] (ORCID: ), Duncan Murdoch [aut], R Core Team [aut]", + "Repository": "RSPM" }, "base64enc": { "Package": "base64enc", - "Version": "0.1-3", + "Version": "0.1-6", "Source": "Repository", - "Title": "Tools for base64 encoding", - "Author": "Simon Urbanek ", + "Title": "Tools for 'base64' Encoding", + "Author": "Simon Urbanek [aut, cre, cph] (https://urbanek.nz, ORCID: )", + "Authors@R": "person(\"Simon\", \"Urbanek\", role=c(\"aut\",\"cre\",\"cph\"), email=\"Simon.Urbanek@r-project.org\", comment=c(\"https://urbanek.nz\", ORCID=\"0000-0003-2297-1732\"))", "Maintainer": "Simon Urbanek ", "Depends": [ "R (>= 2.9.0)" @@ -1058,11 +1036,13 @@ "Enhances": [ "png" ], - "Description": "This package provides tools for handling base64 encoding. It is more flexible than the orphaned base64 package.", + "Description": "Tools for handling 'base64' encoding. It is more flexible than the orphaned 'base64' package.", "License": "GPL-2 | GPL-3", - "URL": "http://www.rforge.net/base64enc", + "URL": "https://www.rforge.net/base64enc", + "BugReports": "https://github.com/s-u/base64enc/issues", "NeedsCompilation": "yes", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "bbmle": { "Package": "bbmle", @@ -1185,35 +1165,37 @@ }, "bit64": { "Package": "bit64", - "Version": "4.6.0-1", + "Version": "4.8.2", "Source": "Repository", "Title": "A S3 Class for Vectors of 64bit Integers", - "Authors@R": "c( person(\"Michael\", \"Chirico\", email = \"michaelchirico4@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Jens\", \"Oehlschlägel\", role = \"aut\"), person(\"Leonardo\", \"Silvestri\", role = \"ctb\"), person(\"Ofek\", \"Shilon\", role = \"ctb\") )", + "Authors@R": "c( person(\"Michael\", \"Chirico\", email=\"michaelchirico4@gmail.com\", role=c(\"aut\", \"cre\")), person(\"Jens\", \"Oehlschlägel\", role=\"aut\"), person(\"Leonardo\", \"Silvestri\", role=\"ctb\"), person(\"Ofek\", \"Shilon\", role=\"ctb\"), person(\"Christian\", \"Ullerich\", role=\"ctb\") )", "Depends": [ - "R (>= 3.4.0)", - "bit (>= 4.0.0)" + "R (>= 3.5.0)" ], "Description": "Package 'bit64' provides serializable S3 atomic 64bit (signed) integers. These are useful for handling database keys and exact counting in +-2^63. WARNING: do not use them as replacement for 32bit integers, integer64 are not supported for subscripting by R-core and they have different semantics when combined with double, e.g. integer64 + double => integer64. Class integer64 can be used in vectors, matrices, arrays and data.frames. Methods are available for coercion from and to logicals, integers, doubles, characters and factors as well as many elementwise and summary functions. Many fast algorithmic operations such as 'match' and 'order' support inter- active data exploration and manipulation and optionally leverage caching.", "License": "GPL-2 | GPL-3", "LazyLoad": "yes", "ByteCompile": "yes", - "URL": "https://github.com/r-lib/bit64", + "URL": "https://github.com/r-lib/bit64, https://bit64.r-lib.org", "Encoding": "UTF-8", "Imports": [ + "bit (>= 4.0.0)", "graphics", "methods", "stats", "utils" ], "Suggests": [ - "testthat (>= 3.0.3)", + "patrick (>= 0.3.0)", + "testthat (>= 3.3.0)", "withr" ], "Config/testthat/edition": "3", - "Config/needs/development": "testthat", - "RoxygenNote": "7.3.2", + "Config/Needs/development": "patrick, testthat", + "Config/Needs/website": "tidyverse/tidytemplate", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Michael Chirico [aut, cre], Jens Oehlschlägel [aut], Leonardo Silvestri [ctb], Ofek Shilon [ctb]", + "Author": "Michael Chirico [aut, cre], Jens Oehlschlägel [aut], Leonardo Silvestri [ctb], Ofek Shilon [ctb], Christian Ullerich [ctb]", "Maintainer": "Michael Chirico ", "Repository": "CRAN" }, @@ -1304,7 +1286,7 @@ }, "broom": { "Package": "broom", - "Version": "1.0.11", + "Version": "1.0.13", "Source": "Repository", "Type": "Package", "Title": "Convert Statistical Objects into Tidy Tibbles", @@ -1427,7 +1409,7 @@ }, "bslib": { "Package": "bslib", - "Version": "0.9.0", + "Version": "0.11.0", "Source": "Repository", "Title": "Custom 'Bootstrap' 'Sass' Themes for 'shiny' and 'rmarkdown'", "Authors@R": "c( person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Garrick\", \"Aden-Buie\", , \"garrick@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-7111-0077\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(, \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Javi\", \"Aguilar\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap colorpicker library\"), person(\"Thomas\", \"Park\", role = c(\"ctb\", \"cph\"), comment = \"Bootswatch library\"), person(, \"PayPal\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap accessibility plugin\") )", @@ -1453,16 +1435,18 @@ "sass (>= 0.4.9)" ], "Suggests": [ + "brand.yml", "bsicons", "curl", "fontawesome", "future", "ggplot2", "knitr", + "lattice", "magrittr", "rappdirs", "rmarkdown (>= 2.7)", - "shiny (> 1.8.1)", + "shiny (>= 1.11.1.9000)", "testthat", "thematic", "tools", @@ -1473,14 +1457,14 @@ "Config/Needs/deploy": "BH, chiflights22, colourpicker, commonmark, cpp11, cpsievert/chiflights22, cpsievert/histoslider, dplyr, DT, ggplot2, ggridges, gt, hexbin, histoslider, htmlwidgets, lattice, leaflet, lubridate, markdown, modelr, plotly, reactable, reshape2, rprojroot, rsconnect, rstudio/shiny, scales, styler, tibble", "Config/Needs/routine": "chromote, desc, renv", "Config/Needs/website": "brio, crosstalk, dplyr, DT, ggplot2, glue, htmlwidgets, leaflet, lorem, palmerpenguins, plotly, purrr, rprojroot, rstudio/htmltools, scales, stringr, tidyr, webshot2", + "Config/roxygen2/version": "8.0.0", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "Config/testthat/start-first": "zzzz-bs-sass, fonts, zzz-precompile, theme-*, rmd-*", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "Collate": "'accordion.R' 'breakpoints.R' 'bs-current-theme.R' 'bs-dependencies.R' 'bs-global.R' 'bs-remove.R' 'bs-theme-layers.R' 'bs-theme-preset-bootswatch.R' 'bs-theme-preset-brand.R' 'bs-theme-preset-builtin.R' 'bs-theme-preset.R' 'utils.R' 'bs-theme-preview.R' 'bs-theme-update.R' 'bs-theme.R' 'bslib-package.R' 'buttons.R' 'card.R' 'deprecated.R' 'files.R' 'fill.R' 'imports.R' 'input-dark-mode.R' 'input-switch.R' 'layout.R' 'nav-items.R' 'nav-update.R' 'navbar_options.R' 'navs-legacy.R' 'navs.R' 'onLoad.R' 'page.R' 'popover.R' 'precompiled.R' 'print.R' 'shiny-devmode.R' 'sidebar.R' 'staticimports.R' 'tooltip.R' 'utils-deps.R' 'utils-shiny.R' 'utils-tags.R' 'value-box.R' 'version-default.R' 'versions.R'", + "Collate": "'accordion.R' 'breakpoints.R' 'bs-current-theme.R' 'bs-dependencies.R' 'bs-global.R' 'bs-remove.R' 'bs-theme-layers.R' 'bs-theme-preset-bootswatch.R' 'bs-theme-preset-brand.R' 'bs-theme-preset-builtin.R' 'bs-theme-preset.R' 'utils.R' 'bs-theme-preview.R' 'bs-theme-update.R' 'bs-theme.R' 'bslib-package.R' 'buttons.R' 'card.R' 'deprecated.R' 'files.R' 'fill.R' 'imports.R' 'input-code-editor.R' 'input-dark-mode.R' 'input-submit.R' 'input-switch.R' 'layout.R' 'nav-items.R' 'nav-update.R' 'navbar_options.R' 'navs-legacy.R' 'navs.R' 'onLoad.R' 'page.R' 'popover.R' 'precompiled.R' 'print.R' 'shiny-devmode.R' 'sidebar.R' 'staticimports.R' 'toast.R' 'toolbar.R' 'tooltip.R' 'utils-deps.R' 'utils-shiny.R' 'utils-tags.R' 'value-box.R' 'version-default.R' 'versions.R'", "NeedsCompilation": "no", - "Author": "Carson Sievert [aut, cre] (), Joe Cheng [aut], Garrick Aden-Buie [aut] (), Posit Software, PBC [cph, fnd], Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Javi Aguilar [ctb, cph] (Bootstrap colorpicker library), Thomas Park [ctb, cph] (Bootswatch library), PayPal [ctb, cph] (Bootstrap accessibility plugin)", + "Author": "Carson Sievert [aut, cre] (ORCID: ), Joe Cheng [aut], Garrick Aden-Buie [aut] (ORCID: ), Posit Software, PBC [cph, fnd], Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Javi Aguilar [ctb, cph] (Bootstrap colorpicker library), Thomas Park [ctb, cph] (Bootswatch library), PayPal [ctb, cph] (Bootstrap accessibility plugin)", "Maintainer": "Carson Sievert ", "Repository": "CRAN" }, @@ -1550,11 +1534,11 @@ }, "car": { "Package": "car", - "Version": "3.1-3", + "Version": "3.1-5", "Source": "Repository", - "Date": "2024-09-23", + "Date": "2026-01-05", "Title": "Companion to Applied Regression", - "Authors@R": "c(person(\"John\", \"Fox\", role = c(\"aut\", \"cre\"), email = \"jfox@mcmaster.ca\"), person(\"Sanford\", \"Weisberg\", role = \"aut\", email = \"sandy@umn.edu\"), person(\"Brad\", \"Price\", role = \"aut\", email = \"brad.price@mail.wvu.edu\"), person(\"Daniel\", \"Adler\", role=\"ctb\"), person(\"Douglas\", \"Bates\", role = \"ctb\"), person(\"Gabriel\", \"Baud-Bovy\", role = \"ctb\"), person(\"Ben\", \"Bolker\", role=\"ctb\"), person(\"Steve\", \"Ellison\", role=\"ctb\"), person(\"David\", \"Firth\", role = \"ctb\"), person(\"Michael\", \"Friendly\", role = \"ctb\"), person(\"Gregor\", \"Gorjanc\", role = \"ctb\"), person(\"Spencer\", \"Graves\", role = \"ctb\"), person(\"Richard\", \"Heiberger\", role = \"ctb\"), person(\"Pavel\", \"Krivitsky\", role = \"ctb\"), person(\"Rafael\", \"Laboissiere\", role = \"ctb\"), person(\"Martin\", \"Maechler\", role=\"ctb\"), person(\"Georges\", \"Monette\", role = \"ctb\"), person(\"Duncan\", \"Murdoch\", role=\"ctb\"), person(\"Henric\", \"Nilsson\", role = \"ctb\"), person(\"Derek\", \"Ogle\", role = \"ctb\"), person(\"Brian\", \"Ripley\", role = \"ctb\"), person(\"Tom\", \"Short\", role=\"ctb\"), person(\"William\", \"Venables\", role = \"ctb\"), person(\"Steve\", \"Walker\", role=\"ctb\"), person(\"David\", \"Winsemius\", role=\"ctb\"), person(\"Achim\", \"Zeileis\", role = \"ctb\"), person(\"R-Core\", role=\"ctb\"))", + "Authors@R": "c(person(\"John\", \"Fox\", role =\"aut\" , email = \"jfox@mcmaster.ca\"), person(\"Sanford\", \"Weisberg\", role = \"aut\", email = \"sandy@umn.edu\"), person(\"Brad\", \"Price\", role = c(\"aut\", \"cre\"), email = \"brad.price@mail.wvu.edu\"), person(\"Daniel\", \"Adler\", role=\"ctb\"), person(\"Douglas\", \"Bates\", role = \"ctb\"), person(\"Gabriel\", \"Baud-Bovy\", role = \"ctb\"), person(\"Ben\", \"Bolker\", role=\"ctb\"), person(\"Steve\", \"Ellison\", role=\"ctb\"), person(\"David\", \"Firth\", role = \"ctb\"), person(\"Michael\", \"Friendly\", role = \"ctb\"), person(\"Gregor\", \"Gorjanc\", role = \"ctb\"), person(\"Spencer\", \"Graves\", role = \"ctb\"), person(\"Richard\", \"Heiberger\", role = \"ctb\"), person(\"Pavel\", \"Krivitsky\", role = \"ctb\"), person(\"Rafael\", \"Laboissiere\", role = \"ctb\"), person(\"Martin\", \"Maechler\", role=\"ctb\"), person(\"Georges\", \"Monette\", role = \"ctb\"), person(\"Duncan\", \"Murdoch\", role=\"ctb\"), person(\"Henric\", \"Nilsson\", role = \"ctb\"), person(\"Derek\", \"Ogle\", role = \"ctb\"), person(\"Iain\", \"Proctor\", role = \"ctb\"), person(\"Brian\", \"Ripley\", role = \"ctb\"), person(\"Tom\", \"Short\", role=\"ctb\"), person(\"William\", \"Venables\", role = \"ctb\"), person(\"Steve\", \"Walker\", role=\"ctb\"), person(\"David\", \"Winsemius\", role=\"ctb\"), person(\"Achim\", \"Zeileis\", role = \"ctb\"), person(\"R-Core\", role=\"ctb\"))", "Depends": [ "R (>= 3.5.0)", "carData (>= 3.0-0)" @@ -1599,20 +1583,20 @@ "LazyLoad": "yes", "Description": "Functions to Accompany J. Fox and S. Weisberg, An R Companion to Applied Regression, Third Edition, Sage, 2019.", "License": "GPL (>= 2)", - "URL": "https://r-forge.r-project.org/projects/car/, https://CRAN.R-project.org/package=car, https://www.john-fox.ca/Companion/index.html", + "URL": "https://github.com/bprice2652/car_repo, https://CRAN.R-project.org/package=car, https://z.umn.edu/carbook", "VignetteBuilder": "knitr", "NeedsCompilation": "no", - "Author": "John Fox [aut, cre], Sanford Weisberg [aut], Brad Price [aut], Daniel Adler [ctb], Douglas Bates [ctb], Gabriel Baud-Bovy [ctb], Ben Bolker [ctb], Steve Ellison [ctb], David Firth [ctb], Michael Friendly [ctb], Gregor Gorjanc [ctb], Spencer Graves [ctb], Richard Heiberger [ctb], Pavel Krivitsky [ctb], Rafael Laboissiere [ctb], Martin Maechler [ctb], Georges Monette [ctb], Duncan Murdoch [ctb], Henric Nilsson [ctb], Derek Ogle [ctb], Brian Ripley [ctb], Tom Short [ctb], William Venables [ctb], Steve Walker [ctb], David Winsemius [ctb], Achim Zeileis [ctb], R-Core [ctb]", - "Maintainer": "John Fox ", + "Author": "John Fox [aut], Sanford Weisberg [aut], Brad Price [aut, cre], Daniel Adler [ctb], Douglas Bates [ctb], Gabriel Baud-Bovy [ctb], Ben Bolker [ctb], Steve Ellison [ctb], David Firth [ctb], Michael Friendly [ctb], Gregor Gorjanc [ctb], Spencer Graves [ctb], Richard Heiberger [ctb], Pavel Krivitsky [ctb], Rafael Laboissiere [ctb], Martin Maechler [ctb], Georges Monette [ctb], Duncan Murdoch [ctb], Henric Nilsson [ctb], Derek Ogle [ctb], Iain Proctor [ctb], Brian Ripley [ctb], Tom Short [ctb], William Venables [ctb], Steve Walker [ctb], David Winsemius [ctb], Achim Zeileis [ctb], R-Core [ctb]", + "Maintainer": "Brad Price ", "Repository": "CRAN" }, "carData": { "Package": "carData", - "Version": "3.0-5", + "Version": "3.0-6", "Source": "Repository", - "Date": "2022-01-05", + "Date": "2026-01-30", "Title": "Companion to Applied Regression Data Sets", - "Authors@R": "c(person(\"John\", \"Fox\", role = c(\"aut\", \"cre\"), email = \"jfox@mcmaster.ca\"), person(\"Sanford\", \"Weisberg\", role = \"aut\", email = \"sandy@umn.edu\"), person(\"Brad\", \"Price\", role = \"aut\", email = \"brad.price@mail.wvu.edu\"))", + "Authors@R": "c(person(\"John\", \"Fox\", role = \"aut\", email = \"jfox@mcmaster.ca\"), person(\"Sanford\", \"Weisberg\", role = \"aut\", email = \"sandy@umn.edu\"), person(\"Brad\", \"Price\", role = c(\"aut\", \"cre\"), email = \"brad.price@mail.wvu.edu\"))", "Depends": [ "R (>= 3.5.0)" ], @@ -1623,18 +1607,16 @@ "LazyData": "yes", "Description": "Datasets to Accompany J. Fox and S. Weisberg, An R Companion to Applied Regression, Third Edition, Sage (2019).", "License": "GPL (>= 2)", - "URL": "https://r-forge.r-project.org/projects/car/, https://CRAN.R-project.org/package=carData, https://socialsciences.mcmaster.ca/jfox/Books/Companion/index.html", - "Author": "John Fox [aut, cre], Sanford Weisberg [aut], Brad Price [aut]", - "Maintainer": "John Fox ", - "Repository": "CRAN", - "Repository/R-Forge/Project": "car", - "Repository/R-Forge/Revision": "694", - "Repository/R-Forge/DateTimeStamp": "2022-01-05 19:40:37", - "NeedsCompilation": "no" + "URL": "https://r-forge.r-project.org/projects/car/, https://CRAN.R-project.org/package=carData, https://z.umn.edu/carbook", + "NeedsCompilation": "no", + "Author": "John Fox [aut], Sanford Weisberg [aut], Brad Price [aut, cre]", + "Maintainer": "Brad Price ", + "Repository": "RSPM", + "Encoding": "UTF-8" }, "checkmate": { "Package": "checkmate", - "Version": "2.3.3", + "Version": "2.3.4", "Source": "Repository", "Type": "Package", "Title": "Fast and Versatile Argument Checks", @@ -1669,18 +1651,18 @@ ], "License": "BSD_3_clause + file LICENSE", "VignetteBuilder": "knitr", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "Collate": "'AssertCollection.R' 'allMissing.R' 'anyInfinite.R' 'anyMissing.R' 'anyNaN.R' 'asInteger.R' 'assert.R' 'helper.R' 'makeExpectation.R' 'makeTest.R' 'makeAssertion.R' 'checkAccess.R' 'checkArray.R' 'checkAtomic.R' 'checkAtomicVector.R' 'checkCharacter.R' 'checkChoice.R' 'checkClass.R' 'checkComplex.R' 'checkCount.R' 'checkDataFrame.R' 'checkDataTable.R' 'checkDate.R' 'checkDirectoryExists.R' 'checkDisjunct.R' 'checkDouble.R' 'checkEnvironment.R' 'checkFALSE.R' 'checkFactor.R' 'checkFileExists.R' 'checkFlag.R' 'checkFormula.R' 'checkFunction.R' 'checkInt.R' 'checkInteger.R' 'checkIntegerish.R' 'checkList.R' 'checkLogical.R' 'checkMatrix.R' 'checkMultiClass.R' 'checkNamed.R' 'checkNames.R' 'checkNull.R' 'checkNumber.R' 'checkNumeric.R' 'checkOS.R' 'checkPOSIXct.R' 'checkPathForOutput.R' 'checkPermutation.R' 'checkR6.R' 'checkRaw.R' 'checkScalar.R' 'checkScalarNA.R' 'checkSetEqual.R' 'checkString.R' 'checkSubset.R' 'checkTRUE.R' 'checkTibble.R' 'checkVector.R' 'coalesce.R' 'isIntegerish.R' 'matchArg.R' 'qassert.R' 'qassertr.R' 'vname.R' 'wfwl.R' 'zzz.R'", "Author": "Michel Lang [cre, aut] (ORCID: ), Bernd Bischl [ctb], Dénes Tóth [ctb] (ORCID: )", "Maintainer": "Michel Lang ", - "Repository": "CRAN" + "Repository": "RSPM" }, "cli": { "Package": "cli", - "Version": "3.6.5", + "Version": "3.6.6", "Source": "Repository", "Title": "Helpers for Developing Command Line Interfaces", - "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"gabor@posit.co\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Kirill\", \"Müller\", role = \"ctb\"), person(\"Salim\", \"Brüggemann\", , \"salim-b@pm.me\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"gabor@posit.co\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Kirill\", \"Müller\", role = \"ctb\"), person(\"Salim\", \"Brüggemann\", , \"salim-b@pm.me\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "A suite of tools to build attractive command line interfaces ('CLIs'), from semantic elements: headings, lists, alerts, paragraphs, etc. Supports custom themes via a 'CSS'-like language. It also contains a number of lower level 'CLI' elements: rules, boxes, trees, and 'Unicode' symbols with 'ASCII' alternatives. It support ANSI colors and text styles as well.", "License": "MIT + file LICENSE", "URL": "https://cli.r-lib.org, https://github.com/r-lib/cli", @@ -1715,12 +1697,13 @@ ], "Config/Needs/website": "r-lib/asciicast, bench, brio, cpp11, decor, desc, fansi, prettyunits, sessioninfo, tidyverse/tidytemplate, usethis, vctrs", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-25", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.2.9000", "NeedsCompilation": "yes", - "Author": "Gábor Csárdi [aut, cre], Hadley Wickham [ctb], Kirill Müller [ctb], Salim Brüggemann [ctb] (), Posit Software, PBC [cph, fnd]", + "Author": "Gábor Csárdi [aut, cre], Hadley Wickham [ctb], Kirill Müller [ctb], Salim Brüggemann [ctb] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Gábor Csárdi ", - "Repository": "CRAN" + "Repository": "RSPM" }, "cluster": { "Package": "cluster", @@ -2044,7 +2027,7 @@ }, "cpp11": { "Package": "cpp11", - "Version": "0.5.2", + "Version": "0.5.5", "Source": "Repository", "Title": "A C++11 Interface for R's C Interface", "Authors@R": "c( person(\"Davis\", \"Vaughan\", email = \"davis@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4777-038X\")), person(\"Jim\",\"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Romain\", \"François\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Benjamin\", \"Kietzman\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", @@ -2083,9 +2066,9 @@ "Config/testthat/edition": "3", "Config/Needs/cpp11/cpp_register": "brio, cli, decor, desc, glue, tibble, vctrs", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Davis Vaughan [aut, cre] (), Jim Hester [aut] (), Romain François [aut] (), Benjamin Kietzman [ctb], Posit Software, PBC [cph, fnd]", + "Author": "Davis Vaughan [aut, cre] (ORCID: ), Jim Hester [aut] (ORCID: ), Romain François [aut] (ORCID: ), Benjamin Kietzman [ctb], Posit Software, PBC [cph, fnd]", "Maintainer": "Davis Vaughan ", "Repository": "CRAN" }, @@ -2153,7 +2136,7 @@ }, "curl": { "Package": "curl", - "Version": "7.0.0", + "Version": "7.1.0", "Source": "Repository", "Type": "Package", "Title": "A Modern and Flexible Web Client for R", @@ -2216,7 +2199,7 @@ }, "data.table": { "Package": "data.table", - "Version": "1.18.0", + "Version": "1.18.4", "Source": "Repository", "Title": "Extension of `data.frame`", "Depends": [ @@ -2242,19 +2225,19 @@ "VignetteBuilder": "knitr", "Encoding": "UTF-8", "ByteCompile": "TRUE", - "Authors@R": "c( person(\"Tyson\",\"Barrett\", role=c(\"aut\",\"cre\"), email=\"t.barrett88@gmail.com\", comment = c(ORCID=\"0000-0002-2137-1391\")), person(\"Matt\",\"Dowle\", role=\"aut\", email=\"mattjdowle@gmail.com\"), person(\"Arun\",\"Srinivasan\", role=\"aut\", email=\"asrini@pm.me\"), person(\"Jan\",\"Gorecki\", role=\"aut\", 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person(\"Vijay\", \"Lulla\", role=\"ctb\"), person(\"Aljaž\", \"Sluga\", role=\"ctb\"), person(\"Bill\", \"Evans\", role=\"ctb\"), person(\"Reino\", \"Bruner\", role=\"ctb\"), person(given=\"@badasahog\", role=\"ctb\", comment=\"GitHub user\"), person(\"Vinit\", \"Thakur\", role=\"ctb\"), person(\"Mukul\", \"Kumar\", role=\"ctb\"), person(\"Ildikó\", \"Czeller\", role=\"ctb\"), person(\"Manmita\", \"Das\", role=\"ctb\"), person(\"Tarun\", \"Thammisetty\", role=\"ctb\") )", "NeedsCompilation": "yes", - "Author": "Tyson Barrett [aut, cre] (ORCID: ), Matt Dowle [aut], Arun Srinivasan [aut], Jan Gorecki [aut], Michael Chirico [aut] (ORCID: ), Toby Hocking [aut] (ORCID: ), Benjamin Schwendinger [aut] (ORCID: ), Ivan Krylov [aut] (ORCID: ), Pasha Stetsenko [ctb], Tom Short [ctb], Steve Lianoglou [ctb], Eduard Antonyan [ctb], Markus Bonsch [ctb], Hugh Parsonage [ctb], Scott Ritchie [ctb], Kun Ren [ctb], Xianying Tan [ctb], Rick Saporta [ctb], Otto Seiskari [ctb], Xianghui Dong [ctb], Michel Lang [ctb], Watal Iwasaki [ctb], Seth Wenchel [ctb], Karl Broman [ctb], Tobias Schmidt [ctb], David Arenburg [ctb], Ethan Smith [ctb], Francois Cocquemas [ctb], Matthieu Gomez [ctb], Philippe Chataignon [ctb], Nello Blaser [ctb], Dmitry Selivanov [ctb], Andrey Riabushenko [ctb], Cheng Lee [ctb], Declan Groves [ctb], Daniel Possenriede [ctb], Felipe Parages [ctb], Denes Toth [ctb], Mus Yaramaz-David [ctb], Ayappan Perumal [ctb], James Sams [ctb], Martin Morgan [ctb], Michael Quinn [ctb], @javrucebo [ctb] (GitHub user), Marc Halperin [ctb], Roy Storey [ctb], Manish Saraswat [ctb], Morgan Jacob [ctb], Michael Schubmehl [ctb], Davis Vaughan [ctb], Leonardo Silvestri [ctb], Jim Hester [ctb], Anthony Damico [ctb], Sebastian Freundt [ctb], David Simons [ctb], Elliott Sales de Andrade [ctb], Cole Miller [ctb], Jens Peder Meldgaard [ctb], Vaclav Tlapak [ctb], Kevin Ushey [ctb], Dirk Eddelbuettel [ctb], Tony Fischetti [ctb], Ofek Shilon [ctb], Vadim Khotilovich [ctb], Hadley Wickham [ctb], Bennet Becker [ctb], Kyle Haynes [ctb], Boniface Christian Kamgang [ctb], Olivier Delmarcell [ctb], Josh O'Brien [ctb], Dereck de Mezquita [ctb], Michael Czekanski [ctb], Dmitry Shemetov [ctb], Nitish Jha [ctb], Joshua Wu [ctb], Iago Giné-Vázquez [ctb], Anirban Chetia [ctb], Doris Amoakohene [ctb], Angel Feliz [ctb], Michael Young [ctb], Mark Seeto [ctb], Philippe Grosjean [ctb], Vincent Runge [ctb], Christian Wia [ctb], Elise Maigné [ctb], Vincent Rocher [ctb], Vijay Lulla [ctb], Aljaž Sluga [ctb], Bill Evans [ctb], Reino Bruner [ctb], @badasahog [ctb] (GitHub user), Vinit Thakur [ctb], Mukul Kumar [ctb], Ildikó Czeller [ctb]", + "Author": "Tyson Barrett [aut, cre] (ORCID: ), Matt Dowle [aut], Arun Srinivasan [aut], Jan Gorecki [aut], Michael Chirico [aut] (ORCID: ), Toby Hocking [aut] (ORCID: ), Benjamin Schwendinger [aut] (ORCID: ), Ivan Krylov [aut] (ORCID: ), Pasha Stetsenko [ctb], Tom Short [ctb], Steve Lianoglou [ctb], Eduard Antonyan [ctb], Markus Bonsch [ctb], Hugh Parsonage [ctb], Scott Ritchie [ctb], Kun Ren [ctb], Xianying Tan [ctb], Rick Saporta [ctb], Otto Seiskari [ctb], Xianghui Dong [ctb], Michel Lang [ctb], Watal Iwasaki [ctb], Seth Wenchel [ctb], Karl Broman [ctb], Tobias Schmidt [ctb], David Arenburg [ctb], Ethan Smith [ctb], Francois Cocquemas [ctb], Matthieu Gomez [ctb], Philippe Chataignon [ctb], Nello Blaser [ctb], Dmitry Selivanov [ctb], Andrey Riabushenko [ctb], Cheng Lee [ctb], Declan Groves [ctb], Daniel Possenriede [ctb], Felipe Parages [ctb], Denes Toth [ctb], Mus Yaramaz-David [ctb], Ayappan Perumal [ctb], James Sams [ctb], Martin Morgan [ctb], Michael Quinn [ctb], @javrucebo [ctb] (GitHub user), Marc Halperin [ctb], Roy Storey [ctb], Manish Saraswat [ctb], Morgan Jacob [ctb], Michael Schubmehl [ctb], Davis Vaughan [ctb], Leonardo Silvestri [ctb], Jim Hester [ctb], Anthony Damico [ctb], Sebastian Freundt [ctb], David Simons [ctb], Elliott Sales de Andrade [ctb], Cole Miller [ctb], Jens Peder Meldgaard [ctb], Vaclav Tlapak [ctb], Kevin Ushey [ctb], Dirk Eddelbuettel [ctb], Tony Fischetti [ctb], Ofek Shilon [ctb], Vadim Khotilovich [ctb], Hadley Wickham [ctb], Bennet Becker [ctb], Kyle Haynes [ctb], Boniface Christian Kamgang [ctb], Olivier Delmarcell [ctb], Josh O'Brien [ctb], Dereck de Mezquita [ctb], Michael Czekanski [ctb], Dmitry Shemetov [ctb], Nitish Jha [ctb], Joshua Wu [ctb], Iago Giné-Vázquez [ctb], Anirban Chetia [ctb], Doris Amoakohene [ctb], Angel Feliz [ctb], Michael Young [ctb], Mark Seeto [ctb], Philippe Grosjean [ctb], Vincent Runge [ctb], Christian Wia [ctb], Elise Maigné [ctb], Vincent Rocher [ctb], Vijay Lulla [ctb], Aljaž Sluga [ctb], Bill Evans [ctb], Reino Bruner [ctb], @badasahog [ctb] (GitHub user), Vinit Thakur [ctb], Mukul Kumar [ctb], Ildikó Czeller [ctb], Manmita Das [ctb], Tarun Thammisetty [ctb]", "Maintainer": "Tyson Barrett ", "Repository": "CRAN" }, "deSolve": { "Package": "deSolve", - "Version": "1.40", + "Version": "1.42", "Source": "Repository", "Title": "Solvers for Initial Value Problems of Differential Equations ('ODE', 'DAE', 'DDE')", "Authors@R": "c(person(\"Karline\",\"Soetaert\", role = c(\"aut\"), email = \"karline.soetaert@nioz.nl\", comment = c(ORCID = \"0000-0003-4603-7100\")), person(\"Thomas\",\"Petzoldt\", role = c(\"aut\", \"cre\"), email = \"thomas.petzoldt@tu-dresden.de\", comment = c(ORCID = \"0000-0002-4951-6468\")), person(\"R. Woodrow\",\"Setzer\", role = c(\"aut\"), email = \"setzer.woodrow@epa.gov\", comment = c(ORCID = \"0000-0002-6709-9186\")), person(\"Peter N.\",\"Brown\", role = \"ctb\", comment = \"files ddaspk.f, dvode.f, zvode.f\"), person(\"George D.\",\"Byrne\", role = \"ctb\", comment = \"files dvode.f, zvode.f\"), person(\"Ernst\",\"Hairer\", role = \"ctb\", comment = \"files radau5.f, radau5a\"), person(\"Alan C.\",\"Hindmarsh\", role = \"ctb\", comment = \"files ddaspk.f, dlsode.f, dvode.f, zvode.f, opdkmain.f, opdka1.f\"), person(\"Cleve\",\"Moler\", role = \"ctb\", comment = \"file dlinpck.f\"), person(\"Linda R.\",\"Petzold\", role = \"ctb\", comment = \"files ddaspk.f, dlsoda.f\"), person(\"Youcef\", \"Saad\", role = \"ctb\", comment = \"file dsparsk.f\"), person(\"Clement W.\",\"Ulrich\", role = \"ctb\", comment = \"file ddaspk.f\") )", - "Author": "Karline Soetaert [aut] (), Thomas Petzoldt [aut, cre] (), R. Woodrow Setzer [aut] (), Peter N. Brown [ctb] (files ddaspk.f, dvode.f, zvode.f), George D. Byrne [ctb] (files dvode.f, zvode.f), Ernst Hairer [ctb] (files radau5.f, radau5a), Alan C. Hindmarsh [ctb] (files ddaspk.f, dlsode.f, dvode.f, zvode.f, opdkmain.f, opdka1.f), Cleve Moler [ctb] (file dlinpck.f), Linda R. Petzold [ctb] (files ddaspk.f, dlsoda.f), Youcef Saad [ctb] (file dsparsk.f), Clement W. Ulrich [ctb] (file ddaspk.f)", + "Author": "Karline Soetaert [aut] (ORCID: ), Thomas Petzoldt [aut, cre] (ORCID: ), R. Woodrow Setzer [aut] (ORCID: ), Peter N. Brown [ctb] (files ddaspk.f, dvode.f, zvode.f), George D. Byrne [ctb] (files dvode.f, zvode.f), Ernst Hairer [ctb] (files radau5.f, radau5a), Alan C. Hindmarsh [ctb] (files ddaspk.f, dlsode.f, dvode.f, zvode.f, opdkmain.f, opdka1.f), Cleve Moler [ctb] (file dlinpck.f), Linda R. Petzold [ctb] (files ddaspk.f, dlsoda.f), Youcef Saad [ctb] (file dsparsk.f), Clement W. Ulrich [ctb] (file ddaspk.f)", "Maintainer": "Thomas Petzoldt ", "Depends": [ "R (>= 3.3.0)" @@ -2267,14 +2250,16 @@ ], "Suggests": [ "scatterplot3d", + "nlme", "FME" ], "Description": "Functions that solve initial value problems of a system of first-order ordinary differential equations ('ODE'), of partial differential equations ('PDE'), of differential algebraic equations ('DAE'), and of delay differential equations. The functions provide an interface to the FORTRAN functions 'lsoda', 'lsodar', 'lsode', 'lsodes' of the 'ODEPACK' collection, to the FORTRAN functions 'dvode', 'zvode' and 'daspk' and a C-implementation of solvers of the 'Runge-Kutta' family with fixed or variable time steps. The package contains routines designed for solving 'ODEs' resulting from 1-D, 2-D and 3-D partial differential equations ('PDE') that have been converted to 'ODEs' by numerical differencing.", "License": "GPL (>= 2)", - "URL": "http://desolve.r-forge.r-project.org/", + "URL": "https://github.com/tpetzoldt/deSolve/", "LazyData": "yes", "NeedsCompilation": "yes", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "desc": { "Package": "desc", @@ -2452,7 +2437,7 @@ }, "dplyr": { "Package": "dplyr", - "Version": "1.1.4", + "Version": "1.2.1", "Source": "Repository", "Type": "Package", "Title": "A Grammar of Data Manipulation", @@ -2462,27 +2447,25 @@ "URL": "https://dplyr.tidyverse.org, https://github.com/tidyverse/dplyr", "BugReports": "https://github.com/tidyverse/dplyr/issues", "Depends": [ - "R (>= 3.5.0)" + "R (>= 4.1.0)" ], "Imports": [ - "cli (>= 3.4.0)", + "cli (>= 3.6.2)", "generics", "glue (>= 1.3.2)", - "lifecycle (>= 1.0.3)", + "lifecycle (>= 1.0.5)", "magrittr (>= 1.5)", "methods", "pillar (>= 1.9.0)", "R6", - "rlang (>= 1.1.0)", + "rlang (>= 1.1.7)", "tibble (>= 3.2.0)", "tidyselect (>= 1.2.0)", "utils", - "vctrs (>= 0.6.4)" + "vctrs (>= 0.7.1)" ], "Suggests": [ - "bench", "broom", - "callr", "covr", "DBI", "dbplyr (>= 2.2.1)", @@ -2490,12 +2473,9 @@ "knitr", "Lahman", "lobstr", - "microbenchmark", "nycflights13", "purrr", "rmarkdown", - "RMySQL", - "RPostgreSQL", "RSQLite", "stringi (>= 1.7.6)", "testthat (>= 3.1.5)", @@ -2503,15 +2483,16 @@ "withr" ], "VignetteBuilder": "knitr", - "Config/Needs/website": "tidyverse, shiny, pkgdown, tidyverse/tidytemplate", + "Config/build/compilation-database": "true", + "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", "Encoding": "UTF-8", "LazyData": "true", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Hadley Wickham [aut, cre] (), Romain François [aut] (), Lionel Henry [aut], Kirill Müller [aut] (), Davis Vaughan [aut] (), Posit Software, PBC [cph, fnd]", + "Author": "Hadley Wickham [aut, cre] (ORCID: ), Romain François [aut] (ORCID: ), Lionel Henry [aut], Kirill Müller [aut] (ORCID: ), Davis Vaughan [aut] (ORCID: ), Posit Software, PBC [cph, fnd]", "Maintainer": "Hadley Wickham ", - "Repository": "CRAN" + "Repository": "RSPM" }, "elliptic": { "Package": "elliptic", @@ -2671,7 +2652,7 @@ }, "fitdistrplus": { "Package": "fitdistrplus", - "Version": "1.2-4", + "Version": "1.2-6", "Source": "Repository", "Title": "Help to Fit of a Parametric Distribution to Non-Censored or Censored Data", "Authors@R": "c(person(\"Marie-Laure\", \"Delignette-Muller\", role = \"aut\", email = \"marielaure.delignettemuller@vetagro-sup.fr\", comment = c(ORCID = \"0000-0001-5453-3994\")), person(\"Christophe\", \"Dutang\", role = \"aut\", email = \"christophe.dutang@ensimag.fr\", comment = c(ORCID = \"0000-0001-6732-1501\")), person(\"Regis\", \"Pouillot\", role = \"ctb\"), person(\"Jean-Baptiste\", \"Denis\", role = \"ctb\"), person(\"Aurélie\", \"Siberchicot\", role = c(\"aut\", \"cre\"), email = \"aurelie.siberchicot@univ-lyon1.fr\", comment = c(ORCID = \"0000-0002-7638-8318\")))", @@ -2759,11 +2740,11 @@ "RoxygenNote": "7.3.2", "VignetteBuilder": "knitr", "RemoteType": "github", + "RemoteHost": "api.github.com", "RemoteUsername": "dustinfife", "RemoteRepo": "flexplot", "RemoteRef": "master", - "RemoteSha": "cae36ba45502ce1794ad35cfeaf0155275db3056", - "RemoteHost": "api.github.com" + "RemoteSha": "cae36ba45502ce1794ad35cfeaf0155275db3056" }, "flexsurv": { "Package": "flexsurv", @@ -2977,7 +2958,7 @@ }, "forecast": { "Package": "forecast", - "Version": "9.0.0", + "Version": "9.0.2", "Source": "Repository", "Title": "Forecasting Functions for Time Series and Linear Models", "Description": "Methods and tools for displaying and analysing univariate time series forecasts including exponential smoothing via state space models and automatic ARIMA modelling.", @@ -2994,10 +2975,9 @@ "magrittr", "nnet", "parallel", - "Rcpp (>= 0.11.0)", + "Rcpp (>= 0.12.4)", "stats", "timeDate", - "tseries", "urca", "withr", "zoo" @@ -3014,7 +2994,7 @@ "uroot" ], "LinkingTo": [ - "Rcpp (>= 0.11.0)", + "Rcpp (>= 0.12.4)", "RcppArmadillo (>= 0.2.35)" ], "LazyData": "yes", @@ -3064,10 +3044,10 @@ }, "fracdiff": { "Package": "fracdiff", - "Version": "1.5-3", + "Version": "1.5-4", "Source": "Repository", - "VersionNote": "Released 1.5-0 on 2019-12-09, 1.5-1 on 2020-01-20, 1.5-2 on 2022-10-31", - "Date": "2024-02-01", + "VersionNote": "Released 1.5-3 on 2024-02-01, 1.5-2 on 2022-10-31, 1.5-1 on 2020-01-20", + "Date": "2026-04-27", "Title": "Fractionally Differenced ARIMA aka ARFIMA(P,d,q) Models", "Authors@R": "c(person(\"Martin\",\"Maechler\", role=c(\"aut\",\"cre\"), email=\"maechler@stat.math.ethz.ch\", comment = c(ORCID = \"0000-0002-8685-9910\")) , person(\"Chris\", \"Fraley\", role=c(\"ctb\",\"cph\"), comment = \"S original; Fortran code\") , person(\"Friedrich\", \"Leisch\", role = \"ctb\", comment = c(\"R port\", ORCID = \"0000-0001-7278-1983\")) , person(\"Valderio\", \"Reisen\", role=\"ctb\", comment = \"fdGPH() & fdSperio()\") , person(\"Artur\", \"Lemonte\", role=\"ctb\", comment = \"fdGPH() & fdSperio()\") , person(\"Rob\", \"Hyndman\", email=\"Rob.Hyndman@monash.edu\", role=\"ctb\", comment = c(\"residuals() & fitted()\", ORCID = \"0000-0002-2140-5352\")) )", "Description": "Maximum likelihood estimation of the parameters of a fractionally differenced ARIMA(p,d,q) model (Haslett and Raftery, Appl.Statistics, 1989); including inference and basic methods. Some alternative algorithms to estimate \"H\".", @@ -3084,22 +3064,22 @@ "BugReports": "https://github.com/mmaechler/fracdiff/issues", "Encoding": "UTF-8", "NeedsCompilation": "yes", - "Author": "Martin Maechler [aut, cre] (), Chris Fraley [ctb, cph] (S original; Fortran code), Friedrich Leisch [ctb] (R port, ), Valderio Reisen [ctb] (fdGPH() & fdSperio()), Artur Lemonte [ctb] (fdGPH() & fdSperio()), Rob Hyndman [ctb] (residuals() & fitted(), )", + "Author": "Martin Maechler [aut, cre] (ORCID: ), Chris Fraley [ctb, cph] (S original; Fortran code), Friedrich Leisch [ctb] (R port, ORCID: ), Valderio Reisen [ctb] (fdGPH() & fdSperio()), Artur Lemonte [ctb] (fdGPH() & fdSperio()), Rob Hyndman [ctb] (residuals() & fitted(), ORCID: )", "Maintainer": "Martin Maechler ", "Repository": "CRAN" }, "fs": { "Package": "fs", - "Version": "1.6.6", + "Version": "2.1.0", "Source": "Repository", "Title": "Cross-Platform File System Operations Based on 'libuv'", - "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", role = \"aut\"), person(\"Jeroen\", \"Ooms\", , \"jeroenooms@gmail.com\", role = \"cre\"), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "A cross-platform interface to file system operations, built on top of the 'libuv' C library.", "License": "MIT + file LICENSE", "URL": "https://fs.r-lib.org, https://github.com/r-lib/fs", "BugReports": "https://github.com/r-lib/fs/issues", "Depends": [ - "R (>= 3.6)" + "R (>= 4.1)" ], "Imports": [ "methods" @@ -3117,26 +3097,26 @@ "withr" ], "VignetteBuilder": "knitr", - "ByteCompile": "true", + "SystemRequirements": "libuv: libuv-devel (rpm) or libuv1-dev (deb). Alternatively to build the vendored libuv 'cmake' is required. GNU make.", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-23", "Copyright": "file COPYRIGHTS", "Encoding": "UTF-8", "Language": "en-US", - "RoxygenNote": "7.2.3", - "SystemRequirements": "GNU make", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Jim Hester [aut], Hadley Wickham [aut], Gábor Csárdi [aut, cre], libuv project contributors [cph] (libuv library), Joyent, Inc. and other Node contributors [cph] (libuv library), Posit Software, PBC [cph, fnd]", - "Maintainer": "Gábor Csárdi ", - "Repository": "CRAN" + "Author": "Jim Hester [aut], Hadley Wickham [aut], Gábor Csárdi [aut], Jeroen Ooms [cre], libuv project contributors [cph] (libuv library), Joyent, Inc. and other Node contributors [cph] (libuv library), Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Jeroen Ooms ", + "Repository": "RSPM" }, "gdtools": { "Package": "gdtools", - "Version": "0.4.4", + "Version": "0.5.1", "Source": "Repository", - "Title": "Utilities for Graphical Rendering and Fonts Management", + "Title": "Font Metrics and Font Management Utilities for R Graphics", "Authors@R": "c( person(\"David\", \"Gohel\", , \"david.gohel@ardata.fr\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@rstudio.com\", role = \"aut\"), person(\"Jeroen\", \"Ooms\", , \"jeroen@berkeley.edu\", role = \"aut\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Yixuan\", \"Qiu\", role = \"ctb\"), person(\"R Core Team\", role = \"cph\", comment = \"Cairo code from X11 device\"), person(\"ArData\", role = \"cph\"), person(\"RStudio\", role = \"cph\") )", - "Description": "Tools are provided to compute metrics of formatted strings and to check the availability of a font. Another set of functions is provided to support the collection of fonts from 'Google Fonts' in a cache. Their use is simple within 'R Markdown' documents and 'shiny' applications but also with graphic productions generated with the 'ggiraph', 'ragg' and 'svglite' packages or with tabular productions from the 'flextable' package.", + "Description": "Compute text metrics (width, ascent, descent) using 'Cairo' and 'FreeType', independently of the active graphic device. Font lookup is delegated to 'systemfonts'. Additional utilities let users register 'Google Fonts' or bundled 'Liberation' fonts, check font availability, and assemble 'htmlDependency' objects so that fonts are correctly embedded in 'Shiny' applications, 'R Markdown' documents, and 'htmlwidgets' outputs such as 'ggiraph'.", "License": "GPL-3 | file LICENSE", "URL": "https://davidgohel.github.io/gdtools/", "BugReports": "https://github.com/davidgohel/gdtools/issues", @@ -3160,8 +3140,8 @@ "Rcpp" ], "Encoding": "UTF-8", - "RoxygenNote": "7.3.3", "SystemRequirements": "cairo, freetype2, fontconfig", + "Config/roxygen2/version": "8.0.0", "NeedsCompilation": "yes", "Author": "David Gohel [aut, cre], Hadley Wickham [aut], Lionel Henry [aut], Jeroen Ooms [aut] (ORCID: ), Yixuan Qiu [ctb], R Core Team [cph] (Cairo code from X11 device), ArData [cph], RStudio [cph]", "Maintainer": "David Gohel ", @@ -3278,7 +3258,7 @@ }, "ggplot2": { "Package": "ggplot2", - "Version": "4.0.1", + "Version": "4.0.3", "Source": "Repository", "Title": "Create Elegant Data Visualisations Using the Grammar of Graphics", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Winston\", \"Chang\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Lionel\", \"Henry\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Kohske\", \"Takahashi\", role = \"aut\"), person(\"Claus\", \"Wilke\", role = \"aut\", comment = c(ORCID = \"0000-0002-7470-9261\")), person(\"Kara\", \"Woo\", role = \"aut\", comment = c(ORCID = \"0000-0002-5125-4188\")), person(\"Hiroaki\", \"Yutani\", role = \"aut\", comment = c(ORCID = \"0000-0002-3385-7233\")), person(\"Dewey\", \"Dunnington\", role = \"aut\", comment = c(ORCID = \"0000-0002-9415-4582\")), person(\"Teun\", \"van den Brand\", role = \"aut\", comment = c(ORCID = \"0000-0002-9335-7468\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", @@ -3407,18 +3387,17 @@ }, "ggpubr": { "Package": "ggpubr", - "Version": "0.6.2", + "Version": "0.6.3", "Source": "Repository", "Type": "Package", "Title": "'ggplot2' Based Publication Ready Plots", - "Date": "2025-10-17", - "Authors@R": "c( person(\"Alboukadel\", \"Kassambara\", role = c(\"aut\", \"cre\"), email = \"alboukadel.kassambara@gmail.com\"))", + "Authors@R": "c( person(\"Alboukadel\", \"Kassambara\", role = c(\"aut\", \"cre\"), email = \"alboukadel.kassambara@gmail.com\"), person(\"Laszlo\", \"Erdey\", role = \"ctb\", email = \"erdey.laszlo@econ.unideb.hu\", comment = \"Faculty of Economics and Business, University of Debrecen, Hungary\"))", "Description": "The 'ggplot2' package is excellent and flexible for elegant data visualization in R. However the default generated plots requires some formatting before we can send them for publication. Furthermore, to customize a 'ggplot', the syntax is opaque and this raises the level of difficulty for researchers with no advanced R programming skills. 'ggpubr' provides some easy-to-use functions for creating and customizing 'ggplot2'- based publication ready plots.", "License": "GPL (>= 2)", "LazyData": "TRUE", "Encoding": "UTF-8", "Depends": [ - "R (>= 3.1.0)", + "R (>= 4.1.0)", "ggplot2 (>= 3.5.2)" ], "Imports": [ @@ -3429,7 +3408,7 @@ "utils", "tidyr (>= 1.3.0)", "purrr", - "dplyr (>= 0.7.1)", + "dplyr (>= 1.1.0)", "cowplot (>= 1.1.1)", "ggsignif", "scales", @@ -3450,16 +3429,16 @@ ], "URL": "https://rpkgs.datanovia.com/ggpubr/", "BugReports": "https://github.com/kassambara/ggpubr/issues", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "Collate": "'utilities_color.R' 'utilities_base.R' 'desc_statby.R' 'utilities.R' 'add_summary.R' 'annotate_figure.R' 'as_ggplot.R' 'as_npc.R' 'axis_scale.R' 'background_image.R' 'bgcolor.R' 'border.R' 'compare_means.R' 'create_aes.R' 'diff_express.R' 'facet.R' 'font.R' 'gene_citation.R' 'gene_expression.R' 'geom_bracket.R' 'geom_exec.R' 'utils-aes.R' 'utils_stat_test_label.R' 'geom_pwc.R' 'get_breaks.R' 'get_coord.R' 'get_legend.R' 'get_palette.R' 'ggadd.R' 'ggadjust_pvalue.R' 'ggarrange.R' 'ggballoonplot.R' 'ggpar.R' 'ggbarplot.R' 'ggboxplot.R' 'ggdensity.R' 'ggpie.R' 'ggdonutchart.R' 'stat_conf_ellipse.R' 'stat_chull.R' 'ggdotchart.R' 'ggdotplot.R' 'ggecdf.R' 'ggerrorplot.R' 'ggexport.R' 'gghistogram.R' 'ggline.R' 'ggmaplot.R' 'ggpaired.R' 'ggparagraph.R' 'ggpubr-package.R' 'ggpubr_args.R' 'ggpubr_options.R' 'ggqqplot.R' 'utilities_label.R' 'stat_cor.R' 'stat_stars.R' 'ggscatter.R' 'ggscatterhist.R' 'ggstripchart.R' 'ggsummarystats.R' 'ggtext.R' 'ggtexttable.R' 'ggviolin.R' 'gradient_color.R' 'grids.R' 'npc_to_data_coord.R' 'reexports.R' 'rotate.R' 'rotate_axis_text.R' 'rremove.R' 'set_palette.R' 'shared_docs.R' 'show_line_types.R' 'show_point_shapes.R' 'stat_anova_test.R' 'stat_central_tendency.R' 'stat_compare_means.R' 'stat_friedman_test.R' 'stat_kruskal_test.R' 'stat_mean.R' 'stat_overlay_normal_density.R' 'stat_pvalue_manual.R' 'stat_regline_equation.R' 'stat_welch_anova_test.R' 'text_grob.R' 'theme_pubr.R' 'theme_transparent.R' 'utils-geom-signif.R' 'utils-pipe.R' 'utils-tidyr.R'", "NeedsCompilation": "no", - "Author": "Alboukadel Kassambara [aut, cre]", + "Author": "Alboukadel Kassambara [aut, cre], Laszlo Erdey [ctb] (Faculty of Economics and Business, University of Debrecen, Hungary)", "Maintainer": "Alboukadel Kassambara ", "Repository": "RSPM" }, "ggrain": { "Package": "ggrain", - "Version": "0.1.0", + "Version": "0.1.2", "Source": "Repository", "Title": "A Rainclouds Geom for 'ggplot2'", "Authors@R": "c( person(\"Nicholas\", \"Judd\", , \"nickkjudd@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-0196-9871\")), person(\"Jordy\", \"van Langen\", , \"jordyvanlangen@gmail.com\", role = c(\"aut\"), comment = c(ORCID = \"0000-0003-2504-2381\")), person(\"Micah\", \"Allen\", , \"\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0001-9399-4179\")), person(\"Rogier\", \"Kievit\", , \"\", role = c(\"aut\"), comment = c(ORCID = \"0000-0003-0700-4568\")))", @@ -3488,7 +3467,7 @@ "NeedsCompilation": "no", "Author": "Nicholas Judd [aut, cre] (ORCID: ), Jordy van Langen [aut] (ORCID: ), Micah Allen [ctb] (ORCID: ), Rogier Kievit [aut] (ORCID: )", "Maintainer": "Nicholas Judd ", - "Repository": "CRAN" + "Repository": "RSPM" }, "ggrastr": { "Package": "ggrastr", @@ -3528,21 +3507,22 @@ }, "ggrepel": { "Package": "ggrepel", - "Version": "0.9.6", + "Version": "0.9.8", "Source": "Repository", - "Authors@R": "c( person(\"Kamil\", \"Slowikowski\", email = \"kslowikowski@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-2843-6370\")), person(\"Alicia\", \"Schep\", role = \"ctb\", comment = c(ORCID = \"0000-0002-3915-0618\")), person(\"Sean\", \"Hughes\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9409-9405\")), person(\"Trung Kien\", \"Dang\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7562-6495\")), person(\"Saulius\", \"Lukauskas\", role = \"ctb\"), person(\"Jean-Olivier\", \"Irisson\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4920-3880\")), person(\"Zhian N\", \"Kamvar\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1458-7108\")), person(\"Thompson\", \"Ryan\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0450-8181\")), person(\"Dervieux\", \"Christophe\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4474-2498\")), person(\"Yutani\", \"Hiroaki\", role = \"ctb\"), person(\"Pierre\", \"Gramme\", role = \"ctb\"), person(\"Amir Masoud\", \"Abdol\", role = \"ctb\"), person(\"Malcolm\", \"Barrett\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0299-5825\")), person(\"Robrecht\", \"Cannoodt\", role = \"ctb\", comment = c(ORCID = \"0000-0003-3641-729X\")), person(\"Michał\", \"Krassowski\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9638-7785\")), person(\"Michael\", \"Chirico\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0787-087X\")), person(\"Pedro\", \"Aphalo\", role = \"ctb\", comment = c(ORCID = \"0000-0003-3385-972X\")), person(\"Francis\", \"Barton\", role = \"ctb\") )", + "Authors@R": "c( person(\"Kamil\", \"Slowikowski\", email = \"kslowikowski@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-2843-6370\")), person(\"Teun\", \"van den Brand\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9335-7468\")), person(\"Alicia\", \"Schep\", role = \"ctb\", comment = c(ORCID = \"0000-0002-3915-0618\")), person(\"Sean\", \"Hughes\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9409-9405\")), person(\"Trung Kien\", \"Dang\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7562-6495\")), person(\"Saulius\", \"Lukauskas\", role = \"ctb\"), person(\"Jean-Olivier\", \"Irisson\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4920-3880\")), person(\"Zhian N\", \"Kamvar\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1458-7108\")), person(\"Thompson\", \"Ryan\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0450-8181\")), person(\"Dervieux\", \"Christophe\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4474-2498\")), person(\"Yutani\", \"Hiroaki\", role = \"ctb\"), person(\"Pierre\", \"Gramme\", role = \"ctb\"), person(\"Amir Masoud\", \"Abdol\", role = \"ctb\"), person(\"Malcolm\", \"Barrett\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0299-5825\")), person(\"Robrecht\", \"Cannoodt\", role = \"ctb\", comment = c(ORCID = \"0000-0003-3641-729X\")), person(\"Michał\", \"Krassowski\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9638-7785\")), person(\"Michael\", \"Chirico\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0787-087X\")), person(\"Pedro\", \"Aphalo\", role = \"ctb\", comment = c(ORCID = \"0000-0003-3385-972X\")), person(\"Francis\", \"Barton\", role = \"ctb\") )", "Title": "Automatically Position Non-Overlapping Text Labels with 'ggplot2'", "Description": "Provides text and label geoms for 'ggplot2' that help to avoid overlapping text labels. Labels repel away from each other and away from the data points.", "Depends": [ - "R (>= 3.0.0)", - "ggplot2 (>= 2.2.0)" + "R (>= 4.1.0)", + "ggplot2 (>= 3.5.2)" ], "Imports": [ "grid", "Rcpp", - "rlang (>= 0.3.0)", - "scales (>= 0.5.0)", - "withr (>= 2.5.0)" + "rlang (>= 1.1.6)", + "S7", + "scales (>= 1.4.0)", + "withr (>= 3.0.2)" ], "Suggests": [ "knitr", @@ -3559,25 +3539,28 @@ "dplyr", "magrittr", "readr", - "stringr" + "stringr", + "marquee", + "rsvg", + "sf" ], "VignetteBuilder": "knitr", "License": "GPL-3 | file LICENSE", "URL": "https://ggrepel.slowkow.com/, https://github.com/slowkow/ggrepel", "BugReports": "https://github.com/slowkow/ggrepel/issues", - "RoxygenNote": "7.3.1", + "RoxygenNote": "7.3.3", "LinkingTo": [ "Rcpp" ], "Encoding": "UTF-8", "NeedsCompilation": "yes", - "Author": "Kamil Slowikowski [aut, cre] (), Alicia Schep [ctb] (), Sean Hughes [ctb] (), Trung Kien Dang [ctb] (), Saulius Lukauskas [ctb], Jean-Olivier Irisson [ctb] (), Zhian N Kamvar [ctb] (), Thompson Ryan [ctb] (), Dervieux Christophe [ctb] (), Yutani Hiroaki [ctb], Pierre Gramme [ctb], Amir Masoud Abdol [ctb], Malcolm Barrett [ctb] (), Robrecht Cannoodt [ctb] (), Michał Krassowski [ctb] (), Michael Chirico [ctb] (), Pedro Aphalo [ctb] (), Francis Barton [ctb]", + "Author": "Kamil Slowikowski [aut, cre] (ORCID: ), Teun van den Brand [ctb] (ORCID: ), Alicia Schep [ctb] (ORCID: ), Sean Hughes [ctb] (ORCID: ), Trung Kien Dang [ctb] (ORCID: ), Saulius Lukauskas [ctb], Jean-Olivier Irisson [ctb] (ORCID: ), Zhian N Kamvar [ctb] (ORCID: ), Thompson Ryan [ctb] (ORCID: ), Dervieux Christophe [ctb] (ORCID: ), Yutani Hiroaki [ctb], Pierre Gramme [ctb], Amir Masoud Abdol [ctb], Malcolm Barrett [ctb] (ORCID: ), Robrecht Cannoodt [ctb] (ORCID: ), Michał Krassowski [ctb] (ORCID: ), Michael Chirico [ctb] (ORCID: ), Pedro Aphalo [ctb] (ORCID: ), Francis Barton [ctb]", "Maintainer": "Kamil Slowikowski ", - "Repository": "CRAN" + "Repository": "RSPM" }, "ggsci": { "Package": "ggsci", - "Version": "4.2.0", + "Version": "5.0.0", "Source": "Repository", "Type": "Package", "Title": "Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'", @@ -3607,7 +3590,7 @@ "RoxygenNote": "7.3.3", "NeedsCompilation": "no", "Author": "Nan Xiao [aut, cre, cph] (ORCID: ), Joshua Cook [ctb], Clara Jégousse [ctb], Hui Chen [ctb], Miaozhu Li [ctb], iTerm2-Color-Schemes contributors [ctb, cph] (iTerm2-Color-Schemes project), Winston Chang [ctb, cph] (staticimports.R)", - "Repository": "CRAN" + "Repository": "RSPM" }, "ggsignif": { "Package": "ggsignif", @@ -3679,16 +3662,16 @@ }, "glue": { "Package": "glue", - "Version": "1.8.0", + "Version": "1.8.1", "Source": "Repository", "Title": "Interpreted String Literals", - "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "An implementation of interpreted string literals, inspired by Python's Literal String Interpolation and Docstrings and Julia's Triple-Quoted String Literals .", "License": "MIT + file LICENSE", "URL": "https://glue.tidyverse.org/, https://github.com/tidyverse/glue", "BugReports": "https://github.com/tidyverse/glue/issues", "Depends": [ - "R (>= 3.6)" + "R (>= 4.1)" ], "Imports": [ "methods" @@ -3698,7 +3681,6 @@ "DBI (>= 1.2.0)", "dplyr", "knitr", - "magrittr", "rlang", "rmarkdown", "RSQLite", @@ -3711,16 +3693,17 @@ "ByteCompile": "true", "Config/Needs/website": "bench, forcats, ggbeeswarm, ggplot2, R.utils, rprintf, tidyr, tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2026-04-16", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Jim Hester [aut] (), Jennifer Bryan [aut, cre] (), Posit Software, PBC [cph, fnd]", + "Author": "Jim Hester [aut] (ORCID: ), Jennifer Bryan [aut, cre] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Jennifer Bryan ", - "Repository": "CRAN" + "Repository": "RSPM" }, "gmp": { "Package": "gmp", - "Version": "0.7-5", + "Version": "0.7-5.1", "Source": "Repository", "Date": "2024-08-23", "Title": "Multiple Precision Arithmetic", @@ -3744,8 +3727,9 @@ "LazyDataNote": "not available, as we use data/*.R *and* our classes", "NeedsCompilation": "yes", "URL": "https://forgemia.inra.fr/sylvain.jasson/gmp", - "Author": "Antoine Lucas [aut, cre] (), Immanuel Scholz [aut], Rainer Boehme [ctb], Sylvain Jasson [ctb], Martin Maechler [ctb]", - "Repository": "CRAN" + "Author": "Antoine Lucas [aut, cre] (ORCID: ), Immanuel Scholz [aut], Rainer Boehme [ctb], Sylvain Jasson [ctb], Martin Maechler [ctb]", + "Repository": "RSPM", + "Encoding": "UTF-8" }, "goftest": { "Package": "goftest", @@ -3827,7 +3811,7 @@ }, "gridtext": { "Package": "gridtext", - "Version": "0.1.5", + "Version": "0.1.6", "Source": "Repository", "Type": "Package", "Title": "Improved Text Rendering Support for 'Grid' Graphics", @@ -3863,11 +3847,10 @@ ], "Encoding": "UTF-8", "RoxygenNote": "7.1.1", - "SystemRequirements": "C++11", "NeedsCompilation": "yes", - "Author": "Claus O. Wilke [aut] (), Brenton M. Wiernik [aut, cre] (, @bmwiernik)", + "Author": "Claus O. Wilke [aut] (ORCID: ), Brenton M. Wiernik [aut, cre] (ORCID: , Twitter: @bmwiernik)", "Maintainer": "Brenton M. Wiernik ", - "Repository": "CRAN" + "Repository": "RSPM" }, "gtable": { "Package": "gtable", @@ -3911,7 +3894,7 @@ }, "highr": { "Package": "highr", - "Version": "0.11", + "Version": "0.12", "Source": "Repository", "Type": "Package", "Title": "Syntax Highlighting for R Source Code", @@ -3933,15 +3916,15 @@ "BugReports": "https://github.com/yihui/highr/issues", "VignetteBuilder": "knitr", "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Yihui Xie [aut, cre] (), Yixuan Qiu [aut], Christopher Gandrud [ctb], Qiang Li [ctb]", + "Author": "Yihui Xie [aut, cre] (ORCID: ), Yixuan Qiu [aut], Christopher Gandrud [ctb], Qiang Li [ctb]", "Maintainer": "Yihui Xie ", - "Repository": "CRAN" + "Repository": "RSPM" }, "htmlTable": { "Package": "htmlTable", - "Version": "2.4.3", + "Version": "2.5.0", "Source": "Repository", "Title": "Advanced Tables for Markdown/HTML", "Authors@R": "c( person(\"Max\", \"Gordon\", email = \"max@gforge.se\", role = c(\"aut\", \"cre\")), person(\"Stephen\", \"Gragg\", role=c(\"aut\")), person(\"Peter\", \"Konings\", role=c(\"aut\")))", @@ -3983,7 +3966,7 @@ "Encoding": "UTF-8", "NeedsCompilation": "no", "VignetteBuilder": "knitr", - "RoxygenNote": "7.2.2", + "RoxygenNote": "7.3.3", "Author": "Max Gordon [aut, cre], Stephen Gragg [aut], Peter Konings [aut]", "Repository": "CRAN" }, @@ -4065,19 +4048,19 @@ }, "httr": { "Package": "httr", - "Version": "1.4.7", + "Version": "1.4.8", "Source": "Repository", "Title": "Tools for Working with URLs and HTTP", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "Useful tools for working with HTTP organised by HTTP verbs (GET(), POST(), etc). Configuration functions make it easy to control additional request components (authenticate(), add_headers() and so on).", "License": "MIT + file LICENSE", "URL": "https://httr.r-lib.org/, https://github.com/r-lib/httr", "BugReports": "https://github.com/r-lib/httr/issues", "Depends": [ - "R (>= 3.5)" + "R (>= 3.6)" ], "Imports": [ - "curl (>= 5.0.2)", + "curl (>= 5.1.0)", "jsonlite", "mime", "openssl (>= 0.8)", @@ -4097,11 +4080,11 @@ "VignetteBuilder": "knitr", "Config/Needs/website": "tidyverse/tidytemplate", "Encoding": "UTF-8", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut, cre], Posit, PBC [cph, fnd]", + "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd]", "Maintainer": "Hadley Wickham ", - "Repository": "CRAN" + "Repository": "RSPM" }, "hypergeo": { "Package": "hypergeo", @@ -4126,10 +4109,10 @@ }, "igraph": { "Package": "igraph", - "Version": "2.2.1", + "Version": "2.3.1", "Source": "Repository", "Title": "Network Analysis and Visualization", - "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Tamás\", \"Nepusz\", , \"ntamas@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-1451-338X\")), person(\"Vincent\", \"Traag\", role = \"aut\", comment = c(ORCID = \"0000-0003-3170-3879\")), person(\"Szabolcs\", \"Horvát\", , \"szhorvat@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-3100-523X\")), person(\"Fabio\", \"Zanini\", , \"fabio.zanini@unsw.edu.au\", role = \"aut\", comment = c(ORCID = \"0000-0001-7097-8539\")), person(\"Daniel\", \"Noom\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Michael\", \"Antonov\", role = \"ctb\"), person(\"Chan Zuckerberg Initiative\", role = \"fnd\", comment = c(ROR = \"02qenvm24\")), person(\"David\", \"Schoch\", , \"david.schoch@cynkra.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-2952-4812\")), person(\"Maëlle\", \"Salmon\", , \"maelle@cynkra.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-2815-0399\")) )", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Tamás\", \"Nepusz\", , \"ntamas@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-1451-338X\")), person(\"Vincent\", \"Traag\", role = \"aut\", comment = c(ORCID = \"0000-0003-3170-3879\")), person(\"Szabolcs\", \"Horvát\", , \"szhorvat@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-3100-523X\")), person(\"Fabio\", \"Zanini\", , \"fabio.zanini@unsw.edu.au\", role = \"aut\", comment = c(ORCID = \"0000-0001-7097-8539\")), person(\"Daniel\", \"Noom\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Michael\", \"Antonov\", role = \"ctb\"), person(\"Chan Zuckerberg Initiative\", role = \"fnd\", comment = c(ROR = \"02qenvm24\")), person(\"David\", \"Schoch\", , \"david.schoch@cynkra.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-2952-4812\")), person(\"Maëlle\", \"Salmon\", , \"maelle@cynkra.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-2815-0399\")), person(\"R Consortium\", role = \"fnd\", comment = c(ROR = \"01z833950\")) )", "Description": "Routines for simple graphs and network analysis. It can handle large graphs very well and provides functions for generating random and regular graphs, graph visualization, centrality methods and much more.", "License": "GPL (>= 2)", "URL": "https://r.igraph.org/, https://igraph.org/, https://igraph.discourse.group/", @@ -4177,8 +4160,9 @@ "Config/build/compilation-database": "false", "Config/build/never-clean": "true", "Config/comment/compilation-database": "Generate manually with pkgload:::generate_db() for faster pkgload::load_all()", - "Config/Needs/build": "r-lib/roxygen2, devtools, irlba, pkgconfig, igraph/igraph.r2cdocs, moodymudskipper/devtag", + "Config/Needs/build": "devtools, irlba, pkgconfig", "Config/Needs/coverage": "covr", + "Config/Needs/roxygen2": "r-lib/roxygen2, igraph/igraph.r2cdocs, moodymudskipper/devtag", "Config/Needs/website": "here, readr, tibble, xmlparsedata, xml2", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", @@ -4187,7 +4171,7 @@ "RoxygenNote": "7.3.3.9000", "SystemRequirements": "libxml2 (optional), glpk (>= 4.57, optional)", "NeedsCompilation": "yes", - "Author": "Gábor Csárdi [aut] (ORCID: ), Tamás Nepusz [aut] (ORCID: ), Vincent Traag [aut] (ORCID: ), Szabolcs Horvát [aut] (ORCID: ), Fabio Zanini [aut] (ORCID: ), Daniel Noom [aut], Kirill Müller [aut, cre] (ORCID: ), Michael Antonov [ctb], Chan Zuckerberg Initiative [fnd] (ROR: ), David Schoch [aut] (ORCID: ), Maëlle Salmon [aut] (ORCID: )", + "Author": "Gábor Csárdi [aut] (ORCID: ), Tamás Nepusz [aut] (ORCID: ), Vincent Traag [aut] (ORCID: ), Szabolcs Horvát [aut] (ORCID: ), Fabio Zanini [aut] (ORCID: ), Daniel Noom [aut], Kirill Müller [aut, cre] (ORCID: ), Michael Antonov [ctb], Chan Zuckerberg Initiative [fnd] (ROR: ), David Schoch [aut] (ORCID: ), Maëlle Salmon [aut] (ORCID: ), R Consortium [fnd] (ROR: )", "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, @@ -4255,38 +4239,70 @@ "Package": "jaspBase", "Version": "0.20.4", "Source": "GitHub", - "Requirements": [ + "Type": "Package", + "Title": "JASP Base", + "Author": "JASP Team", + "Maintainer": "Bruno Boutin ", + "Description": "Package contains the JASP Bayesian and Frequentist analyses. See for more details.", + "License": "GPL2+", + "Imports": [ "cli", "codetools", + "compiler", "ggplot2", + "grDevices", + "grid", "gridExtra", "gridGraphics", "jaspGraphs", "jsonlite", "lifecycle", + "methods", "officer", "pkgbuild", "plyr", "ragg", "R6", - "Rcpp", + "Rcpp (>= 0.12.14)", "rvg", "svglite", "systemfonts", - "withr", - "testthat" + "withr" + ], + "RoxygenNote": "7.3.3", + "Roxygen": "list(markdown = TRUE)", + "Encoding": "UTF-8", + "LinkingTo": [ + "Rcpp" + ], + "RcppModules": "jaspResults", + "NeedsCompilation": "yes", + "Suggests": [ + "testthat (>= 3.0.0)" ], + "Config/testthat/edition": "3", "RemoteType": "github", - "RemoteHost": "api.github.com", + "Remotes": "jasp-stats/jaspGraphs", "RemoteUsername": "jasp-stats", "RemoteRepo": "jaspBase", - "RemoteSha": "93f004588f6d56b46d23210e23bff003ae7b1ff4" + "RemoteRef": "master", + "RemoteSha": "244c661b7a4cdcc9aca0aacbf5555881d90c0985", + "RemoteHost": "api.github.com" }, "jaspDescriptives": { "Package": "jaspDescriptives", "Version": "0.96.5", "Source": "GitHub", - "Requirements": [ + "Type": "Package", + "Title": "Descriptives Module for JASP", + "Date": "2026-04-07", + "Author": "JASP Team", + "Website": "jasp-stats.org", + "Maintainer": "JASP Team ", + "Description": "Explore the data with tables and plots", + "License": "GPL (>= 2)", + "Encoding": "UTF-8", + "Imports": [ "ggplot2", "ggrepel", "jaspBase", @@ -4304,19 +4320,31 @@ "forcats", "patchwork" ], + "RoxygenNote": "7.3.3", "RemoteType": "github", - "RemoteHost": "api.github.com", + "Remotes": "jasp-stats/jaspBase, jasp-stats/jaspGraphs, jasp-stats/jaspTTests, dustinfife/flexplot", "RemoteUsername": "jasp-stats", "RemoteRepo": "jaspDescriptives", - "RemoteSha": "2dfd76a8a9f89a3bb19b88c47fd6589c295296a6" + "RemoteRef": "master", + "RemoteSha": "ff66fe2331680e2078be50b7c9ded54191f9af4a", + "RemoteHost": "api.github.com" }, "jaspGraphs": { "Package": "jaspGraphs", "Version": "0.20.0", "Source": "GitHub", - "Requirements": [ + "Type": "Package", + "Title": "Custom Graphs for JASP", + "Author": "Don van den Bergh", + "Maintainer": "JASP-team ", + "Description": "Graph making functions and wrappers for JASP.", + "License": "GPL", + "Encoding": "UTF-8", + "LazyData": "true", + "RoxygenNote": "7.3.3", + "Imports": [ "cli", - "ggplot2", + "ggplot2 (>= 3.0.0)", "gridExtra", "gtable", "htmlwidgets", @@ -4325,21 +4353,34 @@ "plotly", "R6", "rlang", - "scales", + "scales" + ], + "Suggests": [ "testthat", "vdiffr" ], + "Roxygen": "list(markdown = TRUE)", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteUsername": "jasp-stats", "RemoteRepo": "jaspGraphs", - "RemoteSha": "1eb48e7e0fe9559bbd15da25f30703c7cca246bb" + "RemoteRef": "master", + "RemoteSha": "cbe943517ac21078d0a502bcfaf8ae5e11756a05" }, "jaspTTests": { "Package": "jaspTTests", "Version": "0.96.5", "Source": "GitHub", - "Requirements": [ + "Type": "Package", + "Title": "T-Tests Module for JASP", + "Date": "2022-10-05", + "Author": "JASP Team", + "Website": "jasp-stats.org", + "Maintainer": "JASP Team ", + "Description": "Evaluate the difference between two means", + "License": "GPL (>= 2)", + "Encoding": "UTF-8", + "Imports": [ "BayesFactor", "car", "ggplot2", @@ -4349,11 +4390,59 @@ "plotrix", "plyr" ], + "RoxygenNote": "7.3.2", "RemoteType": "github", + "Remotes": "jasp-stats/jaspBase, jasp-stats/jaspGraphs", "RemoteHost": "api.github.com", "RemoteUsername": "jasp-stats", "RemoteRepo": "jaspTTests", - "RemoteSha": "36ba1f775302ff86dc4be7d3b2aef294d0a41f94" + "RemoteRef": "master", + "RemoteSha": "79e0e449ff7995626c1d6a2dc8688ccfd37c4aa8" + }, + "jaspTools": { + "Package": "jaspTools", + "Version": "0.20.1", + "Source": "GitHub", + "Type": "Package", + "Title": "Helps Preview and Debug JASP Analyses", + "Authors@R": "c( person(\"Tim\", \"de Jong\", role = \"aut\"), person(\"Don\", \"van den Bergh\", role = c(\"ctb\", \"cre\"), email = \"d.vandenbergh@uva.nl\"), person(\"František\", \"Bartoš\", role = \"ctb\"))", + "Maintainer": "Don van den Bergh ", + "Description": "This package assists JASP developers when writing R code. It removes the necessity of building JASP every time a change is made. Rather, analyses can be called directly in R and be debugged interactively.", + "License": "GNU General Public License", + "Encoding": "UTF-8", + "Imports": [ + "archive (>= 1.1.6)", + "cli", + "data.table", + "DBI", + "httr", + "jsonlite", + "lifecycle", + "pkgload", + "remotes", + "rjson", + "RSQLite", + "stringi", + "stringr", + "testthat (>= 3.2.2)", + "vdiffr (>= 1.0.7)" + ], + "Suggests": [ + "ggplot2" + ], + "RoxygenNote": "7.3.3", + "Roxygen": "list(markdown = TRUE)", + "RemoteType": "github", + "RemoteHost": "api.github.com", + "RemoteRepo": "jaspTools", + "RemoteUsername": "jasp-stats", + "RemoteRef": "HEAD", + "RemoteSha": "17576124ee4f15b710237b6d0da64a3aeb9d473c", + "NeedsCompilation": "no", + "Author": "Tim de Jong [aut], Don van den Bergh [ctb, cre], František Bartoš [ctb]", + "Depends": [ + "R (>= 3.5.0)" + ] }, "jpeg": { "Package": "jpeg", @@ -4512,7 +4601,7 @@ }, "later": { "Package": "later", - "Version": "1.4.5", + "Version": "1.4.8", "Source": "Repository", "Type": "Package", "Title": "Utilities for Scheduling Functions to Execute Later with Event Loops", @@ -4548,7 +4637,7 @@ "NeedsCompilation": "yes", "Author": "Winston Chang [aut] (ORCID: ), Joe Cheng [aut], Charlie Gao [aut, cre] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: ), Marcus Geelnard [ctb, cph] (TinyCThread library, https://tinycthread.github.io/), Evan Nemerson [ctb, cph] (TinyCThread library, https://tinycthread.github.io/)", "Maintainer": "Charlie Gao ", - "Repository": "CRAN" + "Repository": "RSPM" }, "lattice": { "Package": "lattice", @@ -4591,16 +4680,18 @@ }, "lazyeval": { "Package": "lazyeval", - "Version": "0.2.2", + "Version": "0.2.3", "Source": "Repository", "Title": "Lazy (Non-Standard) Evaluation", "Description": "An alternative approach to non-standard evaluation using formulas. Provides a full implementation of LISP style 'quasiquotation', making it easier to generate code with other code.", "Authors@R": "c( person(\"Hadley\", \"Wickham\", ,\"hadley@rstudio.com\", c(\"aut\", \"cre\")), person(\"RStudio\", role = \"cph\") )", "License": "GPL-3", - "LazyData": "true", "Depends": [ "R (>= 3.1.0)" ], + "Imports": [ + "rlang" + ], "Suggests": [ "knitr", "rmarkdown (>= 0.2.65)", @@ -4608,25 +4699,28 @@ "covr" ], "VignetteBuilder": "knitr", - "RoxygenNote": "6.1.1", + "RoxygenNote": "7.3.3", + "Config/build/compilation-database": "true", "NeedsCompilation": "yes", "Author": "Hadley Wickham [aut, cre], RStudio [cph]", "Maintainer": "Hadley Wickham ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "libcoin": { "Package": "libcoin", - "Version": "1.0-10", + "Version": "1.0-12", "Source": "Repository", "Title": "Linear Test Statistics for Permutation Inference", - "Date": "2023-09-26", + "Date": "2026-03-11", "Authors@R": "c(person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")), person(\"Henric\", \"Winell\", role = \"aut\", comment = c(ORCID = \"0000-0001-7995-3047\")))", "Description": "Basic infrastructure for linear test statistics and permutation inference in the framework of Strasser and Weber (1999) . This package must not be used by end-users. CRAN package 'coin' implements all user interfaces and is ready to be used by anyone.", "Depends": [ "R (>= 3.4.0)" ], "Suggests": [ - "coin" + "coin", + "bibtex" ], "Imports": [ "stats", @@ -4637,9 +4731,10 @@ ], "NeedsCompilation": "yes", "License": "GPL-2", - "Author": "Torsten Hothorn [aut, cre] (), Henric Winell [aut] ()", + "Author": "Torsten Hothorn [aut, cre] (ORCID: ), Henric Winell [aut] (ORCID: )", "Maintainer": "Torsten Hothorn ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "lifecycle": { "Package": "lifecycle", @@ -4715,74 +4810,76 @@ }, "lme4": { "Package": "lme4", - "Version": "1.1-38", + "Version": "2.0-1", "Source": "Repository", "Title": "Linear Mixed-Effects Models using 'Eigen' and S4", - "Authors@R": "c( person(\"Douglas\",\"Bates\", role=\"aut\", comment=c(ORCID=\"0000-0001-8316-9503\")), person(\"Martin\",\"Maechler\", role=\"aut\", comment=c(ORCID=\"0000-0002-8685-9910\")), person(\"Ben\",\"Bolker\",email=\"bbolker+lme4@gmail.com\", role=c(\"aut\",\"cre\"), comment=c(ORCID=\"0000-0002-2127-0443\")), person(\"Steven\",\"Walker\",role=\"aut\", comment=c(ORCID=\"0000-0002-4394-9078\")), person(\"Rune Haubo Bojesen\",\"Christensen\", role=\"ctb\", comment=c(ORCID=\"0000-0002-4494-3399\")), person(\"Henrik\",\"Singmann\", role=\"ctb\", comment=c(ORCID=\"0000-0002-4842-3657\")), person(\"Bin\", \"Dai\", role=\"ctb\"), person(\"Fabian\", \"Scheipl\", role=\"ctb\", comment=c(ORCID=\"0000-0001-8172-3603\")), person(\"Gabor\", \"Grothendieck\", role=\"ctb\"), person(\"Peter\", \"Green\", role=\"ctb\", comment=c(ORCID=\"0000-0002-0238-9852\")), person(\"John\", \"Fox\", role=\"ctb\"), person(\"Alexander\", \"Bauer\", role=\"ctb\"), person(\"Pavel N.\", \"Krivitsky\", role=c(\"ctb\",\"cph\"), comment=c(ORCID=\"0000-0002-9101-3362\", \"shared copyright on simulate.formula\")), person(\"Emi\", \"Tanaka\", role = \"ctb\", comment = c(ORCID=\"0000-0002-1455-259X\")), person(\"Mikael\", \"Jagan\", role = \"ctb\", comment = c(ORCID=\"0000-0002-3542-2938\")), person(\"Ross D.\", \"Boylan\", email=\"ross.boylan@ucsf.edu\", role=(\"ctb\"), comment = c(ORCID=\"0009-0003-4123-8090\")), person(\"Anna\", \"Ly\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0210-0342\")) )", - "Description": "Fit linear and generalized linear mixed-effects models. The models and their components are represented using S4 classes and methods. The core computational algorithms are implemented using the 'Eigen' C++ library for numerical linear algebra and 'RcppEigen' \"glue\".", + "Authors@R": "c(person(\"Douglas\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Martin\", \"Maechler\", role = \"aut\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Ben\", \"Bolker\", role = c(\"cre\", \"aut\"), email = \"bbolker+lme4@gmail.com\", comment = c(ORCID = \"0000-0002-2127-0443\")), person(\"Steven\", \"Walker\", role = \"aut\", comment = c(ORCID = \"0000-0002-4394-9078\")), person(\"Rune Haubo Bojesen\", \"Christensen\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4494-3399\")), person(\"Henrik\", \"Singmann\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4842-3657\")), person(\"Bin\", \"Dai\", role = \"ctb\"), person(\"Fabian\", \"Scheipl\", role = \"ctb\", comment = c(ORCID = \"0000-0001-8172-3603\")), person(\"Gabor\", \"Grothendieck\", role = \"ctb\"), person(\"Peter\", \"Green\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0238-9852\")), person(\"John\", \"Fox\", role = \"ctb\"), person(\"Alexander\", \"Bauer\", role = \"ctb\"), person(\"Pavel N.\", \"Krivitsky\", role = c(\"ctb\", \"cph\"), comment = c(ORCID = \"0000-0002-9101-3362\", \"shared copyright on simulate.formula\")), person(\"Emi\", \"Tanaka\", role = \"ctb\", comment = c(ORCID = \"0000-0002-1455-259X\")), person(\"Mikael\", \"Jagan\", role = \"aut\", comment = c(ORCID = \"0000-0002-3542-2938\")), person(\"Ross D.\", \"Boylan\", role = \"ctb\", comment = c(ORCID = \"0009-0003-4123-8090\")), person(\"Anna\", \"Ly\", role = \"aut\", comment = c(ORCID = \"0000-0002-0210-0342\")))", + "Description": "Fit linear and generalized linear mixed-effects models. The models and their components are represented using S4 classes and methods. The core computational algorithms are implemented using the 'Eigen' C++ library for numerical linear algebra and 'RcppEigen' \"glue\".", "Depends": [ - "R (>= 3.6.0)", + "R (>= 3.6)", "Matrix", "methods", "stats" ], "LinkingTo": [ + "Matrix (>= 1.5-0)", "Rcpp (>= 0.10.5)", - "RcppEigen (>= 0.3.3.9.4)", - "Matrix (>= 1.5-0)" + "RcppEigen (>= 0.3.3.9.4)" ], "Imports": [ + "MASS", + "Rdpack", + "boot", "graphics", "grid", - "splines", - "utils", - "parallel", - "MASS", "lattice", - "boot", - "nlme (>= 3.1-123)", "minqa (>= 1.1.15)", + "nlme (>= 3.1-123)", "nloptr (>= 1.0.4)", - "reformulas (>= 0.3.0)", + "parallel", + "reformulas (>= 0.4.3.1)", "rlang", - "Rdpack" + "splines", + "utils" ], - "RdMacros": "Rdpack", "Suggests": [ - "knitr", - "rmarkdown", + "HSAUR3", "MEMSS", - "testthat (>= 0.8.1)", + "car", + "dfoptim", + "gamm4", "ggplot2", + "glmmTMB", + "knitr", + "merDeriv", + "mgcv", "mlmRev", + "numDeriv", "optimx (>= 2013.8.6)", - "gamm4", "pbkrtest", - "HSAUR3", - "numDeriv", - "car", - "dfoptim", - "mgcv", - "statmod", + "rmarkdown", "rr2", "semEff", - "tibble", - "merDeriv" + "statmod", + "testthat (>= 0.8.1)", + "tibble" ], "Enhances": [ "DHARMa", "performance" ], + "RdMacros": "Rdpack", "VignetteBuilder": "knitr", "LazyData": "yes", "License": "GPL (>= 2)", "URL": "https://github.com/lme4/lme4/", "BugReports": "https://github.com/lme4/lme4/issues", "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Douglas Bates [aut] (ORCID: ), Martin Maechler [aut] (ORCID: ), Ben Bolker [aut, cre] (ORCID: ), Steven Walker [aut] (ORCID: ), Rune Haubo Bojesen Christensen [ctb] (ORCID: ), Henrik Singmann [ctb] (ORCID: ), Bin Dai [ctb], Fabian Scheipl [ctb] (ORCID: ), Gabor Grothendieck [ctb], Peter Green [ctb] (ORCID: ), John Fox [ctb], Alexander Bauer [ctb], Pavel N. Krivitsky [ctb, cph] (ORCID: , shared copyright on simulate.formula), Emi Tanaka [ctb] (ORCID: ), Mikael Jagan [ctb] (ORCID: ), Ross D. Boylan [ctb] (ORCID: ), Anna Ly [ctb] (ORCID: )", + "Author": "Douglas Bates [aut] (ORCID: ), Martin Maechler [aut] (ORCID: ), Ben Bolker [cre, aut] (ORCID: ), Steven Walker [aut] (ORCID: ), Rune Haubo Bojesen Christensen [ctb] (ORCID: ), Henrik Singmann [ctb] (ORCID: ), Bin Dai [ctb], Fabian Scheipl [ctb] (ORCID: ), Gabor Grothendieck [ctb], Peter Green [ctb] (ORCID: ), John Fox [ctb], Alexander Bauer [ctb], Pavel N. Krivitsky [ctb, cph] (ORCID: , shared copyright on simulate.formula), Emi Tanaka [ctb] (ORCID: ), Mikael Jagan [aut] (ORCID: ), Ross D. Boylan [ctb] (ORCID: ), Anna Ly [aut] (ORCID: )", "Maintainer": "Ben Bolker ", - "Repository": "CRAN" + "Repository": "RSPM" }, "lmtest": { "Package": "lmtest", @@ -4882,14 +4979,14 @@ }, "lubridate": { "Package": "lubridate", - "Version": "1.9.4", + "Version": "1.9.5", "Source": "Repository", "Type": "Package", "Title": "Make Dealing with Dates a Little Easier", "Authors@R": "c( person(\"Vitalie\", \"Spinu\", , \"spinuvit@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Garrett\", \"Grolemund\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Davis\", \"Vaughan\", role = \"ctb\"), person(\"Ian\", \"Lyttle\", role = \"ctb\"), person(\"Imanuel\", \"Costigan\", role = \"ctb\"), person(\"Jason\", \"Law\", role = \"ctb\"), person(\"Doug\", \"Mitarotonda\", role = \"ctb\"), person(\"Joseph\", \"Larmarange\", role = \"ctb\"), person(\"Jonathan\", \"Boiser\", role = \"ctb\"), person(\"Chel Hee\", \"Lee\", role = \"ctb\") )", "Maintainer": "Vitalie Spinu ", "Description": "Functions to work with date-times and time-spans: fast and user friendly parsing of date-time data, extraction and updating of components of a date-time (years, months, days, hours, minutes, and seconds), algebraic manipulation on date-time and time-span objects. The 'lubridate' package has a consistent and memorable syntax that makes working with dates easy and fun.", - "License": "GPL (>= 2)", + "License": "MIT + file LICENSE", "URL": "https://lubridate.tidyverse.org, https://github.com/tidyverse/lubridate", "BugReports": "https://github.com/tidyverse/lubridate/issues", "Depends": [ @@ -4898,7 +4995,7 @@ ], "Imports": [ "generics", - "timechange (>= 0.3.0)" + "timechange (>= 0.4.0)" ], "Suggests": [ "covr", @@ -4919,16 +5016,16 @@ "Config/testthat/edition": "3", "Encoding": "UTF-8", "LazyData": "true", - "RoxygenNote": "7.2.3", - "SystemRequirements": "C++11, A system with zoneinfo data (e.g. /usr/share/zoneinfo). On Windows the zoneinfo included with R is used.", + "RoxygenNote": "7.3.3", + "SystemRequirements": "A system with zoneinfo data (e.g. /usr/share/zoneinfo). On Windows the zoneinfo included with R is used.", "Collate": "'Dates.r' 'POSIXt.r' 'util.r' 'parse.r' 'timespans.r' 'intervals.r' 'difftimes.r' 'durations.r' 'periods.r' 'accessors-date.R' 'accessors-day.r' 'accessors-dst.r' 'accessors-hour.r' 'accessors-minute.r' 'accessors-month.r' 'accessors-quarter.r' 'accessors-second.r' 'accessors-tz.r' 'accessors-week.r' 'accessors-year.r' 'am-pm.r' 'time-zones.r' 'numeric.r' 'coercion.r' 'constants.r' 'cyclic_encoding.r' 'data.r' 'decimal-dates.r' 'deprecated.r' 'format_ISO8601.r' 'guess.r' 'hidden.r' 'instants.r' 'leap-years.r' 'ops-addition.r' 'ops-compare.r' 'ops-division.r' 'ops-integer-division.r' 'ops-m+.r' 'ops-modulo.r' 'ops-multiplication.r' 'ops-subtraction.r' 'package.r' 'pretty.r' 'round.r' 'stamp.r' 'tzdir.R' 'update.r' 'vctrs.R' 'zzz.R'", "NeedsCompilation": "yes", "Author": "Vitalie Spinu [aut, cre], Garrett Grolemund [aut], Hadley Wickham [aut], Davis Vaughan [ctb], Ian Lyttle [ctb], Imanuel Costigan [ctb], Jason Law [ctb], Doug Mitarotonda [ctb], Joseph Larmarange [ctb], Jonathan Boiser [ctb], Chel Hee Lee [ctb]", - "Repository": "CRAN" + "Repository": "RSPM" }, "magrittr": { "Package": "magrittr", - "Version": "2.0.4", + "Version": "2.0.5", "Source": "Repository", "Type": "Package", "Title": "A Forward-Pipe Operator for R", @@ -4955,7 +5052,7 @@ "NeedsCompilation": "yes", "Author": "Stefan Milton Bache [aut, cph] (Original author and creator of magrittr), Hadley Wickham [aut], Lionel Henry [cre], Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Lionel Henry ", - "Repository": "CRAN" + "Repository": "RSPM" }, "markdown": { "Package": "markdown", @@ -5156,48 +5253,24 @@ "Repository": "CRAN", "Author": "Douglas Bates [aut], Katharine M. Mullen [aut, cre], John C. Nash [aut], Ravi Varadhan [aut]" }, - "mle.tools": { - "Package": "mle.tools", - "Version": "1.0.0", - "Source": "Repository", - "Type": "Package", - "Title": "Expected/Observed Fisher Information and Bias-Corrected Maximum Likelihood Estimate(s)", - "License": "GPL (>= 2)", - "Date": "2017-02-21", - "Author": "Josmar Mazucheli", - "Maintainer": "Josmar Mazucheli ", - "Description": "Calculates the expected/observed Fisher information and the bias-corrected maximum likelihood estimate(s) via Cox-Snell Methodology.", - "Depends": [ - "R (>= 3.0.2)" - ], - "Imports": [ - "stats" - ], - "Suggests": [ - "fitdistrplus (>= 1.0-6)" - ], - "RoxygenNote": "5.0.1", - "Encoding": "UTF-8", - "NeedsCompilation": "no", - "Repository": "CRAN" - }, "mnormt": { "Package": "mnormt", - "Version": "2.1.1", + "Version": "2.1.2", "Source": "Repository", - "Date": "2022-09-26", + "Date": "2026-01-25", "Title": "The Multivariate Normal and t Distributions, and Their Truncated Versions", - "Author": "Adelchi Azzalini [aut, cre], Alan Genz [aut] (most Fortran code), Alan Miller [ctb] (Fortran routine PHI), Michael J. Wichura [ctb] (Fortran routine PHINV), G. W. Hill [ctb] (Fortran routine STDINV), Yihong Ge [ctb] (Fortran routines BNVU and MVBVU).", + "Authors@R": "c(person(given = \"Adelchi\", family = \"Azzalini\", role = c(\"aut\", \"cre\"), email = \"adelchi.azzalini@unipd.it\"), person(given = \"Alan\", family = \"Genz\", role = \"aut\", comment = \"most Fortran code\"), person(given = \"Alan\", family = \"Miller\", role = \"ctb\", comment = \"Fortran routine PHI\"), person(given = c(\"Michael\", \"J.\"), family = \"Wichura\", role = \"ctb\", comment = \"Fortran routine PHINV\"), person(given = c(\"G.\", \"W.\"), family = \"Hill\", role = \"ctb\", comment = \"Fortran routine STDINV\"), person(given = \"Yihong\", family = \"Ge.\", role = \"ctb\", comment = \"Fortran routines BNVU and MVBVU\"))", "Maintainer": "Adelchi Azzalini ", "Depends": [ - "R (>= 2.2.0)" + "R (>= 3.0.0)" ], - "Description": "Functions are provided for computing the density and the distribution function of d-dimensional normal and \"t\" random variables, possibly truncated (on one side or two sides), and for generating random vectors sampled from these distributions, except sampling from the truncated \"t\". Moments of arbitrary order of a multivariate truncated normal are computed, and converted to cumulants up to order 4. Probabilities are computed via non-Monte Carlo methods; different routines are used in the case d=1, d=2, d=3, d>3, if d denotes the dimensionality.", + "Description": "Functions are provided for computing the density and the distribution function of multi-dimensional normal and \"t\" random variables, possibly truncated (on one side or two sides), and for generating random vectors sampled from these distributions, except sampling from the truncated \"t\". Moments of arbitrary order of a multivariate truncated normal are computed, and converted to cumulants up to order 4. Probabilities are computed via non-Monte Carlo methods; different routines are used in the case d=1, d=2, d=3, d>3, if d denotes the dimensionality.", "License": "GPL-2 | GPL-3", "URL": "http://azzalini.stat.unipd.it/SW/Pkg-mnormt/", "NeedsCompilation": "yes", "Encoding": "UTF-8", - "Repository": "CRAN" + "Author": "Adelchi Azzalini [aut, cre], Alan Genz [aut] (most Fortran code), Alan Miller [ctb] (Fortran routine PHI), Michael J. Wichura [ctb] (Fortran routine PHINV), G. W. Hill [ctb] (Fortran routine STDINV), Yihong Ge. [ctb] (Fortran routines BNVU and MVBVU)", + "Repository": "RSPM" }, "modelr": { "Package": "modelr", @@ -5316,11 +5389,11 @@ }, "multcomp": { "Package": "multcomp", - "Version": "1.4-29", + "Version": "1.4-30", "Source": "Repository", "Title": "Simultaneous Inference in General Parametric Models", - "Date": "2025-10-19", - "Authors@R": "c(person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")), person(\"Frank\", \"Bretz\", role = \"aut\"), person(\"Peter\", \"Westfall\", role = \"aut\"), person(\"Richard M.\", \"Heiberger\", role = \"ctb\"), person(\"Andre\", \"Schuetzenmeister\", role = \"ctb\"), person(\"Susan\", \"Scheibe\", role = \"ctb\"))", + "Date": "2026-03-09", + "Authors@R": "c(person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")), person(\"Frank\", \"Bretz\", role = \"aut\"), person(\"Peter\", \"Westfall\", role = \"aut\"), person(\"Richard M.\", \"Heiberger\", role = \"ctb\"), person(\"Andre\", \"Schuetzenmeister\", role = \"ctb\"), person(\"Susan\", \"Scheibe\", role = \"ctb\"), person(\"Christian\", \"Ritz\", role = \"ctb\"), person(\"Christian B.\", \"Pipper\", role = \"ctb\"))", "Description": "Simultaneous tests and confidence intervals for general linear hypotheses in parametric models, including linear, generalized linear, linear mixed effects, and survival models. The package includes demos reproducing analyzes presented in the book \"Multiple Comparisons Using R\" (Bretz, Hothorn, Westfall, 2010, CRC Press).", "Depends": [ "stats", @@ -5352,23 +5425,24 @@ "HH", "asd", "gsDesign", - "lattice" + "lattice", + "bibtex" ], "URL": "http://multcomp.R-forge.R-project.org, https://www.routledge.com/Multiple-Comparisons-Using-R/Bretz-Hothorn-Westfall/p/book/9781584885740", "LazyData": "yes", "License": "GPL-2", "NeedsCompilation": "no", - "Author": "Torsten Hothorn [aut, cre] (ORCID: ), Frank Bretz [aut], Peter Westfall [aut], Richard M. Heiberger [ctb], Andre Schuetzenmeister [ctb], Susan Scheibe [ctb]", + "Author": "Torsten Hothorn [aut, cre] (ORCID: ), Frank Bretz [aut], Peter Westfall [aut], Richard M. Heiberger [ctb], Andre Schuetzenmeister [ctb], Susan Scheibe [ctb], Christian Ritz [ctb], Christian B. Pipper [ctb]", "Maintainer": "Torsten Hothorn ", "Repository": "RSPM", "Encoding": "UTF-8" }, "mvtnorm": { "Package": "mvtnorm", - "Version": "1.3-3", + "Version": "1.3-7", "Source": "Repository", "Title": "Multivariate Normal and t Distributions", - "Date": "2025-01-09", + "Date": "2026-04-14", "Authors@R": "c(person(\"Alan\", \"Genz\", role = \"aut\"), person(\"Frank\", \"Bretz\", role = \"aut\"), person(\"Tetsuhisa\", \"Miwa\", role = \"aut\"), person(\"Xuefei\", \"Mi\", role = \"aut\"), person(\"Friedrich\", \"Leisch\", role = \"ctb\"), person(\"Fabian\", \"Scheipl\", role = \"ctb\"), person(\"Bjoern\", \"Bornkamp\", role = \"ctb\", comment = c(ORCID = \"0000-0002-6294-8185\")), person(\"Martin\", \"Maechler\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")))", "Description": "Computes multivariate normal and t probabilities, quantiles, random deviates, and densities. Log-likelihoods for multivariate Gaussian models and Gaussian copulae parameterised by Cholesky factors of covariance or precision matrices are implemented for interval-censored and exact data, or a mix thereof. Score functions for these log-likelihoods are available. A class representing multiple lower triangular matrices and corresponding methods are part of this package.", "Imports": [ @@ -5379,14 +5453,16 @@ ], "Suggests": [ "qrng", - "numDeriv" + "numDeriv", + "bibtex" ], "License": "GPL-2", "URL": "http://mvtnorm.R-forge.R-project.org", "NeedsCompilation": "yes", - "Author": "Alan Genz [aut], Frank Bretz [aut], Tetsuhisa Miwa [aut], Xuefei Mi [aut], Friedrich Leisch [ctb], Fabian Scheipl [ctb], Bjoern Bornkamp [ctb] (), Martin Maechler [ctb] (), Torsten Hothorn [aut, cre] ()", + "Author": "Alan Genz [aut], Frank Bretz [aut], Tetsuhisa Miwa [aut], Xuefei Mi [aut], Friedrich Leisch [ctb], Fabian Scheipl [ctb], Bjoern Bornkamp [ctb] (ORCID: ), Martin Maechler [ctb] (ORCID: ), Torsten Hothorn [aut, cre] (ORCID: )", "Maintainer": "Torsten Hothorn ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "nlme": { "Package": "nlme", @@ -5533,7 +5609,7 @@ }, "officer": { "Package": "officer", - "Version": "0.7.3", + "Version": "0.7.5", "Source": "Repository", "Type": "Package", "Title": "Manipulation of Microsoft Word and PowerPoint Documents", @@ -5566,12 +5642,13 @@ "magick", "rmarkdown", "rsvg", + "mschart", "testthat", "withr" ], "Encoding": "UTF-8", - "RoxygenNote": "7.3.3", - "Collate": "'core_properties.R' 'custom_properties.R' 'defunct.R' 'dev-utils.R' 'docx_add.R' 'docx_comments.R' 'docx_cursor.R' 'docx_part.R' 'docx_replace.R' 'docx_section.R' 'docx_settings.R' 'docx_styles.R' 'docx_utils_funs.R' 'empty_content.R' 'formatting_properties.R' 'fortify_docx.R' 'fortify_pptx.R' 'knitr_utils.R' 'officer.R' 'ooxml.R' 'ooxml_block_objects.R' 'ooxml_run_objects.R' 'openxml_content_type.R' 'openxml_document.R' 'pack_folder.R' 'ph_location.R' 'post-proc.R' 'ppt_class_dir_collection.R' 'ppt_classes.R' 'ppt_notes.R' 'ppt_ph_dedupe_layout.R' 'ppt_ph_manipulate.R' 'ppt_ph_rename_layout.R' 'ppt_ph_with_methods.R' 'pptx_informations.R' 'pptx_layout_helper.R' 'pptx_matrix.R' 'utils.R' 'pptx_slide_manip.R' 'read_docx.R' 'docx_write.R' 'read_docx_styles.R' 'read_pptx.R' 'read_xlsx.R' 'relationship.R' 'rtf.R' 'shape_properties.R' 'shorcuts.R' 'docx_append_context.R' 'utils-xml.R' 'deprecated.R' 'zzz.R'", + "Collate": "'core_properties.R' 'custom_properties.R' 'defunct.R' 'dev-utils.R' 'docx_add.R' 'docx_comments.R' 'docx_cursor.R' 'docx_embed_font.R' 'docx_part.R' 'docx_replace.R' 'docx_section.R' 'docx_settings.R' 'docx_styles.R' 'docx_utils_funs.R' 'empty_content.R' 'formatting_properties.R' 'fortify_docx.R' 'fortify_pptx.R' 'knitr_utils.R' 'officer.R' 'ooxml.R' 'ooxml_block_objects.R' 'ooxml_run_objects.R' 'openxml_content_type.R' 'openxml_document.R' 'pack_folder.R' 'ph_location.R' 'post-proc.R' 'ppt_class_dir_collection.R' 'ppt_classes.R' 'ppt_notes.R' 'ppt_ph_dedupe_layout.R' 'ppt_ph_manipulate.R' 'ppt_ph_rename_layout.R' 'ppt_ph_with_methods.R' 'pptx_informations.R' 'pptx_layout_helper.R' 'pptx_matrix.R' 'utils.R' 'pptx_slide_manip.R' 'read_docx.R' 'docx_write.R' 'read_docx_styles.R' 'read_pptx.R' 'read_xlsx.R' 'relationship.R' 'rtf.R' 'shape_properties.R' 'shorcuts.R' 'docx_append_context.R' 'utils-xml.R' 'deprecated.R' 'zzz.R'", + "Config/roxygen2/version": "8.0.0", "NeedsCompilation": "no", "Author": "David Gohel [aut, cre], Stefan Moog [aut], Mark Heckmann [aut] (ORCID: ), ArData [cph], Frank Hangler [ctb] (function body_replace_all_text), Liz Sander [ctb] (several documentation fixes), Anton Victorson [ctb] (fixes xml structures), Jon Calder [ctb] (update vignettes), John Harrold [ctb] (function annotate_base), John Muschelli [ctb] (google doc compatibility), Bill Denney [ctb] (ORCID: , function as.matrix.rpptx), Nikolai Beck [ctb] (set speaker notes for .pptx documents), Greg Leleu [ctb] (fields functionality in ppt), Majid Eismann [ctb], Wahiduzzaman Khan [ctb] (vectorization of remove_slide), Hongyuan Jia [ctb] (ORCID: ), Michael Stackhouse [ctb]", "Maintainer": "David Gohel ", @@ -5579,7 +5656,7 @@ }, "openssl": { "Package": "openssl", - "Version": "2.3.4", + "Version": "2.4.1", "Source": "Repository", "Type": "Package", "Title": "Toolkit for Encryption, Signatures and Certificates Based on OpenSSL", @@ -5678,10 +5755,10 @@ }, "party": { "Package": "party", - "Version": "1.3-18", + "Version": "1.3-20", "Source": "Repository", "Title": "A Laboratory for Recursive Partytioning", - "Date": "2025-01-29", + "Date": "2026-03-25", "Authors@R": "c(person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")), person(\"Kurt\", \"Hornik\", role = \"aut\", email = \"Kurt.Hornik@R-project.org\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(\"Carolin\", \"Strobl\", role = \"aut\", email = \"carolin.strobl@psychologie.uzh.ch\", comment = c(ORCID = \"0000-0003-0952-3230\")), person(\"Achim\", \"Zeileis\", role = \"aut\", email = \"Achim.Zeileis@R-project.org\", comment = c(ORCID = \"0000-0003-0918-3766\")))", "Description": "A computational toolbox for recursive partitioning. The core of the package is ctree(), an implementation of conditional inference trees which embed tree-structured regression models into a well defined theory of conditional inference procedures. This non-parametric class of regression trees is applicable to all kinds of regression problems, including nominal, ordinal, numeric, censored as well as multivariate response variables and arbitrary measurement scales of the covariates. Based on conditional inference trees, cforest() provides an implementation of Breiman's random forests. The function mob() implements an algorithm for recursive partitioning based on parametric models (e.g. linear models, GLMs or survival regression) employing parameter instability tests for split selection. Extensible functionality for visualizing tree-structured regression models is available. The methods are described in Hothorn et al. (2006) , Zeileis et al. (2008) and Strobl et al. (2007) .", "Depends": [ @@ -5712,15 +5789,17 @@ "varImp", "randomForest", "lattice", - "AER" + "AER", + "bibtex" ], "LazyData": "yes", "License": "GPL-2", "URL": "http://party.R-forge.R-project.org", "NeedsCompilation": "yes", - "Author": "Torsten Hothorn [aut, cre] (), Kurt Hornik [aut] (), Carolin Strobl [aut] (), Achim Zeileis [aut] ()", + "Author": "Torsten Hothorn [aut, cre] (ORCID: ), Kurt Hornik [aut] (ORCID: ), Carolin Strobl [aut] (ORCID: ), Achim Zeileis [aut] (ORCID: )", "Maintainer": "Torsten Hothorn ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "patchwork": { "Package": "patchwork", @@ -5953,7 +6032,7 @@ }, "pkgload": { "Package": "pkgload", - "Version": "1.5.0", + "Version": "1.5.2", "Source": "Repository", "Title": "Simulate Package Installation and Attach", "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"R Core team\", role = \"ctb\", comment = \"Some namespace and vignette code extracted from base R\") )", @@ -6002,7 +6081,7 @@ }, "plotly": { "Package": "plotly", - "Version": "4.11.0", + "Version": "4.12.0", "Source": "Repository", "Title": "Create Interactive Web Graphics via 'plotly.js'", "Authors@R": "c(person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"cpsievert1@gmail.com\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Chris\", \"Parmer\", role = \"aut\", email = \"chris@plot.ly\"), person(\"Toby\", \"Hocking\", role = \"aut\", email = \"tdhock5@gmail.com\"), person(\"Scott\", \"Chamberlain\", role = \"aut\", email = \"myrmecocystus@gmail.com\"), person(\"Karthik\", \"Ram\", role = \"aut\", email = \"karthik.ram@gmail.com\"), person(\"Marianne\", \"Corvellec\", role = \"aut\", email = \"marianne.corvellec@igdore.org\", comment = c(ORCID = \"0000-0002-1994-3581\")), person(\"Pedro\", \"Despouy\", role = \"aut\", email = \"pedro@plot.ly\"), person(\"Salim\", \"Brüggemann\", role = \"ctb\", email = \"salim-b@pm.me\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Plotly Technologies Inc.\", role = \"cph\"))", @@ -6011,7 +6090,7 @@ "URL": "https://plotly-r.com, https://github.com/plotly/plotly.R, https://plotly.com/r/", "BugReports": "https://github.com/plotly/plotly.R/issues", "Depends": [ - "R (>= 3.2.0)", + "R (>= 3.5.0)", "ggplot2 (>= 3.0.0)" ], "Imports": [ @@ -6069,17 +6148,17 @@ "ggridges" ], "LazyData": "true", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "Encoding": "UTF-8", "Config/Needs/check": "tidyverse/ggplot2, ggobi/GGally, rcmdcheck, devtools, reshape2, s2", "NeedsCompilation": "no", "Author": "Carson Sievert [aut, cre] (ORCID: ), Chris Parmer [aut], Toby Hocking [aut], Scott Chamberlain [aut], Karthik Ram [aut], Marianne Corvellec [aut] (ORCID: ), Pedro Despouy [aut], Salim Brüggemann [ctb] (ORCID: ), Plotly Technologies Inc. [cph]", "Maintainer": "Carson Sievert ", - "Repository": "CRAN" + "Repository": "RSPM" }, "plotrix": { "Package": "plotrix", - "Version": "3.8-13", + "Version": "3.8-14", "Source": "Repository", "Title": "Various Plotting Functions", "Authors@R": "c( person(\"Jim\", \"Lemon\", role = \"aut\"), person(\"Ben\", \"Bolker\", role = \"ctb\"), person(\"Sander\", \"Oom\", role = \"ctb\"), person(\"Eduardo\", \"Klein\", role = \"ctb\"), person(\"Barry\", \"Rowlingson\", role = \"ctb\"), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Anupam\", \"Tyagi\", role = \"ctb\"), person(\"Olivier\", \"Eterradossi\", role = \"ctb\"), person(\"Gabor\", \"Grothendieck\", role = \"ctb\"), person(\"Michael\", \"Toews\", role = \"ctb\"), person(\"John\", \"Kane\", role = \"ctb\"), person(\"Rolf\", \"Turner\", role = \"ctb\"), person(\"Carl\", \"Witthoft\", role = \"ctb\"), person(\"Julian\", \"Stander\", role = \"ctb\"), person(\"Thomas\", \"Petzoldt\", role = \"ctb\"), person(\"Remko\", \"Duursma\", role = \"ctb\"), person(\"Elisa\", \"Biancotto\", role = \"ctb\"), person(\"Ofir\", \"Levy\", role = \"ctb\"), person(\"Christophe\", \"Dutang\", role = \"ctb\"), person(\"Peter\", \"Solymos\", role = \"ctb\"), person(\"Robby\", \"Engelmann\", role = \"ctb\"), person(\"Michael\", \"Hecker\", role = \"ctb\"), person(\"Felix\", \"Steinbeck\", role = \"ctb\"), person(\"Hans\", \"Borchers\", role = \"ctb\"), person(\"Henrik\", \"Singmann\", role = \"ctb\"), person(\"Ted\", \"Toal\", role = \"ctb\"), person(\"Derek\", \"Ogle\", role = \"ctb\"), person(\"Darshan\", \"Baral\", role = \"ctb\"), person(\"Ulrike\", \"Groemping\", role = \"ctb\"), person(\"Bill\", \"Venables\", role = \"ctb\"), person(family = \"The CRAN Team\", role = \"ctb\"), person(\"Duncan\", \"Murdoch\", email = \"murdoch.duncan@gmail.com\", role = c(\"ctb\", \"cre\")))", @@ -6095,11 +6174,12 @@ "Depends": [ "R (>= 3.5.0)" ], - "Repository": "CRAN", + "Repository": "RSPM", "URL": "https://plotrix.github.io/plotrix/, https://github.com/plotrix/plotrix", "BugReports": "https://github.com/plotrix/plotrix/issues", "Author": "Jim Lemon [aut], Ben Bolker [ctb], Sander Oom [ctb], Eduardo Klein [ctb], Barry Rowlingson [ctb], Hadley Wickham [ctb], Anupam Tyagi [ctb], Olivier Eterradossi [ctb], Gabor Grothendieck [ctb], Michael Toews [ctb], John Kane [ctb], Rolf Turner [ctb], Carl Witthoft [ctb], Julian Stander [ctb], Thomas Petzoldt [ctb], Remko Duursma [ctb], Elisa Biancotto [ctb], Ofir Levy [ctb], Christophe Dutang [ctb], Peter Solymos [ctb], Robby Engelmann [ctb], Michael Hecker [ctb], Felix Steinbeck [ctb], Hans Borchers [ctb], Henrik Singmann [ctb], Ted Toal [ctb], Derek Ogle [ctb], Darshan Baral [ctb], Ulrike Groemping [ctb], Bill Venables [ctb], The CRAN Team [ctb], Duncan Murdoch [ctb, cre]", - "Maintainer": "Duncan Murdoch " + "Maintainer": "Duncan Murdoch ", + "Encoding": "UTF-8" }, "plyr": { "Package": "plyr", @@ -6140,10 +6220,11 @@ }, "png": { "Package": "png", - "Version": "0.1-8", + "Version": "0.1-9", "Source": "Repository", "Title": "Read and write PNG images", - "Author": "Simon Urbanek ", + "Author": "Simon Urbanek [aut, cre, cph] (https://urbanek.nz, ORCID: )", + "Authors@R": "person(\"Simon\", \"Urbanek\", role=c(\"aut\",\"cre\",\"cph\"), email=\"Simon.Urbanek@r-project.org\", comment=c(\"https://urbanek.nz\", ORCID=\"0000-0003-2297-1732\"))", "Maintainer": "Simon Urbanek ", "Depends": [ "R (>= 2.9.0)" @@ -6151,9 +6232,11 @@ "Description": "This package provides an easy and simple way to read, write and display bitmap images stored in the PNG format. It can read and write both files and in-memory raw vectors.", "License": "GPL-2 | GPL-3", "SystemRequirements": "libpng", - "URL": "http://www.rforge.net/png/", + "URL": "https://www.rforge.net/png/", + "BugReports": "https://github.com/s-u/png/issues/", "NeedsCompilation": "yes", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "polynom": { "Package": "polynom", @@ -6198,10 +6281,10 @@ }, "processx": { "Package": "processx", - "Version": "3.8.6", + "Version": "3.9.0", "Source": "Repository", "Title": "Execute and Control System Processes", - "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Ascent Digital Services\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"Ascent Digital Services\", role = c(\"cph\", \"fnd\")) )", "Description": "Tools to run system processes in the background. It can check if a background process is running; wait on a background process to finish; get the exit status of finished processes; kill background processes. It can read the standard output and error of the processes, using non-blocking connections. 'processx' can poll a process for standard output or error, with a timeout. It can also poll several processes at once.", "License": "MIT + file LICENSE", "URL": "https://processx.r-lib.org, https://github.com/r-lib/processx", @@ -6210,7 +6293,7 @@ "R (>= 3.4.0)" ], "Imports": [ - "ps (>= 1.2.0)", + "ps (>= 1.9.3)", "R6", "utils" ], @@ -6229,10 +6312,11 @@ ], "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-25", "Encoding": "UTF-8", - "RoxygenNote": "7.3.1.9000", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Gábor Csárdi [aut, cre, cph] (), Winston Chang [aut], Posit Software, PBC [cph, fnd], Ascent Digital Services [cph, fnd]", + "Author": "Gábor Csárdi [aut, cre, cph] (ORCID: ), Winston Chang [aut], Posit Software, PBC [cph, fnd] (ROR: ), Ascent Digital Services [cph, fnd]", "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, @@ -6285,10 +6369,10 @@ }, "ps": { "Package": "ps", - "Version": "1.9.1", + "Version": "1.9.3", "Source": "Repository", "Title": "List, Query, Manipulate System Processes", - "Authors@R": "c( person(\"Jay\", \"Loden\", role = \"aut\"), person(\"Dave\", \"Daeschler\", role = \"aut\"), person(\"Giampaolo\", \"Rodola'\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Jay\", \"Loden\", role = \"aut\"), person(\"Dave\", \"Daeschler\", role = \"aut\"), person(\"Giampaolo\", \"Rodola'\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "List, query and manipulate all system processes, on 'Windows', 'Linux' and 'macOS'.", "License": "MIT + file LICENSE", "URL": "https://github.com/r-lib/ps, https://ps.r-lib.org/", @@ -6315,18 +6399,19 @@ "Biarch": "true", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-28", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Jay Loden [aut], Dave Daeschler [aut], Giampaolo Rodola' [aut], Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd]", + "Author": "Jay Loden [aut], Dave Daeschler [aut], Giampaolo Rodola' [aut], Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Gábor Csárdi ", - "Repository": "CRAN" + "Repository": "RSPM" }, "psych": { "Package": "psych", - "Version": "2.5.6", + "Version": "2.6.5", "Source": "Repository", - "Date": "2025-06-20", + "Date": "2026-05-11", "Title": "Procedures for Psychological, Psychometric, and Personality Research", "Authors@R": "person(\"William\", \"Revelle\", role =c(\"aut\",\"cre\"), email=\"revelle@northwestern.edu\", comment=c(ORCID = \"0000-0003-4880-9610\") )", "Description": "A general purpose toolbox developed originally for personality, psychometric theory and experimental psychology. Functions are primarily for multivariate analysis and scale construction using factor analysis, principal component analysis, cluster analysis and reliability analysis, although others provide basic descriptive statistics. Item Response Theory is done using factor analysis of tetrachoric and polychoric correlations. Functions for analyzing data at multiple levels include within and between group statistics, including correlations and factor analysis. Validation and cross validation of scales developed using basic machine learning algorithms are provided, as are functions for simulating and testing particular item and test structures. Several functions serve as a useful front end for structural equation modeling. Graphical displays of path diagrams, including mediation models, factor analysis and structural equation models are created using basic graphics. Some of the functions are written to support a book on psychometric theory as well as publications in personality research. For more information, see the web page.", @@ -6362,7 +6447,7 @@ }, "purrr": { "Package": "purrr", - "Version": "1.2.1", + "Version": "1.2.2", "Source": "Repository", "Title": "Functional Programming Tools", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"https://ror.org/03wc8by49\")) )", @@ -6407,7 +6492,7 @@ "NeedsCompilation": "yes", "Author": "Hadley Wickham [aut, cre] (ORCID: ), Lionel Henry [aut], Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Hadley Wickham ", - "Repository": "CRAN" + "Repository": "RSPM" }, "qcc": { "Package": "qcc", @@ -6457,43 +6542,6 @@ "NeedsCompilation": "yes", "Repository": "CRAN" }, - "quantmod": { - "Package": "quantmod", - "Version": "0.4.28", - "Source": "Repository", - "Type": "Package", - "Title": "Quantitative Financial Modelling Framework", - "Authors@R": "c( person(given=c(\"Jeffrey\",\"A.\"), family=\"Ryan\", role=c(\"aut\",\"cph\")), person(given=c(\"Joshua\",\"M.\"), family=\"Ulrich\", role=c(\"cre\",\"aut\"), email=\"josh.m.ulrich@gmail.com\"), person(given=c(\"Ethan\",\"B.\"), family=\"Smith\", role=\"ctb\"), person(given=\"Wouter\", family=\"Thielen\", role=\"ctb\"), person(given=\"Paul\", family=\"Teetor\", role=\"ctb\"), person(given=\"Steve\", family=\"Bronder\", role=\"ctb\") )", - "Depends": [ - "R (>= 3.2.0)", - "xts(>= 0.9-0)", - "zoo", - "TTR(>= 0.2)", - "methods" - ], - "Imports": [ - "curl", - "jsonlite(>= 1.1)" - ], - "Suggests": [ - "DBI", - "RMySQL", - "RSQLite", - "timeSeries", - "xml2", - "downloader", - "tinytest" - ], - "Description": "Specify, build, trade, and analyse quantitative financial trading strategies.", - "LazyLoad": "yes", - "License": "GPL-3", - "URL": "https://www.quantmod.com/, https://github.com/joshuaulrich/quantmod", - "BugReports": "https://github.com/joshuaulrich/quantmod/issues", - "NeedsCompilation": "no", - "Author": "Jeffrey A. Ryan [aut, cph], Joshua M. Ulrich [cre, aut], Ethan B. Smith [ctb], Wouter Thielen [ctb], Paul Teetor [ctb], Steve Bronder [ctb]", - "Maintainer": "Joshua M. Ulrich ", - "Repository": "CRAN" - }, "quantreg": { "Package": "quantreg", "Version": "6.1", @@ -6534,7 +6582,7 @@ }, "ragg": { "Package": "ragg", - "Version": "1.5.0", + "Version": "1.5.2", "Source": "Repository", "Type": "Package", "Title": "Graphic Devices Based on AGG", @@ -6563,7 +6611,7 @@ "Config/testthat/edition": "3", "Config/usethis/last-upkeep": "2025-04-25", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "SystemRequirements": "freetype2, libpng, libtiff, libjpeg, libwebp, libwebpmux", "NeedsCompilation": "yes", "Author": "Thomas Lin Pedersen [cre, aut] (ORCID: ), Maxim Shemanarev [aut, cph] (Author of AGG), Tony Juricic [ctb, cph] (Contributor to AGG), Milan Marusinec [ctb, cph] (Contributor to AGG), Spencer Garrett [ctb] (Contributor to AGG), Posit Software, PBC [cph, fnd] (ROR: )", @@ -6602,14 +6650,14 @@ }, "rbibutils": { "Package": "rbibutils", - "Version": "2.4", + "Version": "2.4.1", "Source": "Repository", "Type": "Package", "Title": "Read 'Bibtex' Files and Convert Between Bibliography Formats", - "Authors@R": "c( person(given = c(\"Georgi\", \"N.\"), family = \"Boshnakov\", role = c(\"aut\", \"cre\"), \t email = \"georgi.boshnakov@manchester.ac.uk\", comment = c(\"R port, R code, new C code and modifications to bibutils' C code, conversion to Bibentry (R and C code)\", comment = c(ORCID = \"0000-0003-2839-346X\")) ), person(given = \"Chris\", family = \"Putman\", role = \"aut\", comment = \"src/*, author of the bibutils libraries, https://sourceforge.net/projects/bibutils/\"), person(given = \"Richard\", family = \"Mathar\", role = \"ctb\", comment = \"src/addsout.c\"), person(given = \"Johannes\", family = \"Wilm\", role = \"ctb\", comment = \"src/biblatexin.c, src/bltypes.c\"), person(\"R Core Team\", role = \"ctb\", comment = \"base R's bibentry and bibstyle implementation\") )", + "Authors@R": "c( person(given = c(\"Georgi\", \"N.\"), family = \"Boshnakov\", role = c(\"aut\", \"cre\"), \t email = \"georgi.boshnakov@manchester.ac.uk\", comment = c(ORCID = \"0000-0003-2839-346X\", \"R port, R code, new C code and modifications to bibutils' C code, conversion to Bibentry (R and C code)\") ), person(given = \"Chris\", family = \"Putman\", role = \"aut\", comment = \"src/*, author of the bibutils libraries, https://sourceforge.net/projects/bibutils/\"), person(given = \"Richard\", family = \"Mathar\", role = \"ctb\", comment = \"src/addsout.c\"), person(given = \"Johannes\", family = \"Wilm\", role = \"ctb\", comment = \"src/biblatexin.c, src/bltypes.c\"), person(\"R Core Team\", role = \"ctb\", comment = \"base R's bibentry and bibstyle implementation\") )", "Description": "Read and write 'Bibtex' files. Convert between bibliography formats, including 'Bibtex', 'Biblatex', 'PubMed', 'Endnote', and 'Bibentry'. Includes a port of the 'bibutils' utilities by Chris Putnam . Supports all bibliography formats and character encodings implemented in 'bibutils'.", "License": "GPL-2", - "URL": "https://geobosh.github.io/rbibutils/ (doc), https://github.com/GeoBosh/rbibutils (devel)", + "URL": "https://geobosh.github.io/rbibutils/ (doc), https://CRAN.R-project.org/package=rbibutils", "BugReports": "https://github.com/GeoBosh/rbibutils/issues", "Depends": [ "R (>= 2.10)" @@ -6624,13 +6672,13 @@ "Encoding": "UTF-8", "NeedsCompilation": "yes", "Config/Needs/memcheck": "devtools, rcmdcheck", - "Author": "Georgi N. Boshnakov [aut, cre] (R port, R code, new C code and modifications to bibutils' C code, conversion to Bibentry (R and C code), comment.ORCID: 0000-0003-2839-346X), Chris Putman [aut] (src/*, author of the bibutils libraries, https://sourceforge.net/projects/bibutils/), Richard Mathar [ctb] (src/addsout.c), Johannes Wilm [ctb] (src/biblatexin.c, src/bltypes.c), R Core Team [ctb] (base R's bibentry and bibstyle implementation)", + "Author": "Georgi N. Boshnakov [aut, cre] (ORCID: , R port, R code, new C code and modifications to bibutils' C code, conversion to Bibentry (R and C code)), Chris Putman [aut] (src/*, author of the bibutils libraries, https://sourceforge.net/projects/bibutils/), Richard Mathar [ctb] (src/addsout.c), Johannes Wilm [ctb] (src/biblatexin.c, src/bltypes.c), R Core Team [ctb] (base R's bibentry and bibstyle implementation)", "Maintainer": "Georgi N. Boshnakov ", - "Repository": "CRAN" + "Repository": "RSPM" }, "reformulas": { "Package": "reformulas", - "Version": "0.4.3.1", + "Version": "0.4.4", "Source": "Repository", "Title": "Machinery for Processing Random Effect Formulas", "Authors@R": "c( person(given = \"Ben\", family = \"Bolker\", role = c(\"aut\", \"cre\"), email = \"bolker@mcmaster.ca\", comment=c(ORCID=\"0000-0002-2127-0443\")), person(\"Anna\", \"Ly\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0210-0342\")) )", @@ -6649,14 +6697,14 @@ "lme4", "tinytest", "glmmTMB", - "testthat (>= 3.0.0)" + "Formula" ], "RoxygenNote": "7.3.3", "Config/testthat/edition": "3", "NeedsCompilation": "no", "Author": "Ben Bolker [aut, cre] (ORCID: ), Anna Ly [ctb] (ORCID: )", "Maintainer": "Ben Bolker ", - "Repository": "CRAN" + "Repository": "RSPM" }, "remotes": { "Package": "remotes", @@ -6707,7 +6755,7 @@ }, "renv": { "Package": "renv", - "Version": "1.1.7", + "Version": "1.2.3", "Source": "Repository", "Type": "Package", "Title": "Project Environments", @@ -6779,8 +6827,8 @@ }, "rlang": { "Package": "rlang", - "Version": "1.1.7", - "Source": "Repository", + "Version": "1.2.0.9000", + "Source": "GitHub", "Title": "Functions for Base Types and Core R and 'Tidyverse' Features", "Description": "A toolbox for working with base types, core R features like the condition system, and core 'Tidyverse' features like tidy evaluation.", "Authors@R": "c( person(\"Lionel\", \"Henry\", ,\"lionel@posit.co\", c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", ,\"hadley@posit.co\", \"aut\"), person(given = \"mikefc\", email = \"mikefc@coolbutuseless.com\", role = \"cph\", comment = \"Hash implementation based on Mike's xxhashlite\"), person(given = \"Yann\", family = \"Collet\", role = \"cph\", comment = \"Author of the embedded xxHash library\"), person(given = \"Posit, PBC\", role = c(\"cph\", \"fnd\")) )", @@ -6807,7 +6855,7 @@ "pkgload", "rmarkdown", "stats", - "testthat (>= 3.2.0)", + "testthat (>= 3.3.2)", "tibble", "usethis", "vctrs (>= 0.2.3)", @@ -6818,19 +6866,24 @@ ], "Encoding": "UTF-8", "RoxygenNote": "7.3.3", + "Roxygen": "list(markdown = TRUE)", "URL": "https://rlang.r-lib.org, https://github.com/r-lib/rlang", "BugReports": "https://github.com/r-lib/rlang/issues", "Config/build/compilation-database": "true", "Config/testthat/edition": "3", "Config/Needs/website": "dplyr, tidyverse/tidytemplate", - "NeedsCompilation": "yes", "Author": "Lionel Henry [aut, cre], Hadley Wickham [aut], mikefc [cph] (Hash implementation based on Mike's xxhashlite), Yann Collet [cph] (Author of the embedded xxHash library), Posit, PBC [cph, fnd]", "Maintainer": "Lionel Henry ", - "Repository": "CRAN" + "RemoteType": "github", + "RemoteHost": "api.github.com", + "RemoteUsername": "r-lib", + "RemoteRepo": "rlang", + "RemoteRef": "main", + "RemoteSha": "b2e9594bdfc539c65370eb6be6208cc8637d356f" }, "rmarkdown": { "Package": "rmarkdown", - "Version": "2.30", + "Version": "2.31", "Source": "Repository", "Type": "Package", "Title": "Dynamic Documents for R", @@ -6877,20 +6930,20 @@ "Config/Needs/website": "rstudio/quillt, pkgdown", "Config/testthat/edition": "3", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "SystemRequirements": "pandoc (>= 1.14) - http://pandoc.org", "NeedsCompilation": "no", "Author": "JJ Allaire [aut], Yihui Xie [aut, cre] (ORCID: ), Christophe Dervieux [aut] (ORCID: ), Jonathan McPherson [aut], Javier Luraschi [aut], Kevin Ushey [aut], Aron Atkins [aut], Hadley Wickham [aut], Joe Cheng [aut], Winston Chang [aut], Richard Iannone [aut] (ORCID: ), Andrew Dunning [ctb] (ORCID: ), Atsushi Yasumoto [ctb, cph] (ORCID: , cph: Number sections Lua filter), Barret Schloerke [ctb], Carson Sievert [ctb] (ORCID: ), Devon Ryan [ctb] (ORCID: ), Frederik Aust [ctb] (ORCID: ), Jeff Allen [ctb], JooYoung Seo [ctb] (ORCID: ), Malcolm Barrett [ctb], Rob Hyndman [ctb], Romain Lesur [ctb], Roy Storey [ctb], Ruben Arslan [ctb], Sergio Oller [ctb], Posit Software, PBC [cph, fnd], jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/rmd/h/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), Greg Franko [ctb, cph] (tocify library), John MacFarlane [ctb, cph] (Pandoc templates), Google, Inc. [ctb, cph] (ioslides library), Dave Raggett [ctb] (slidy library), W3C [cph] (slidy library), Dave Gandy [ctb, cph] (Font-Awesome), Ben Sperry [ctb] (Ionicons), Drifty [cph] (Ionicons), Aidan Lister [ctb, cph] (jQuery StickyTabs), Benct Philip Jonsson [ctb, cph] (pagebreak Lua filter), Albert Krewinkel [ctb, cph] (pagebreak Lua filter)", "Maintainer": "Yihui Xie ", - "Repository": "CRAN" + "Repository": "RSPM" }, "rpart": { "Package": "rpart", - "Version": "4.1.24", + "Version": "4.1.27", "Source": "Repository", "Priority": "recommended", - "Date": "2025-01-06", - "Authors@R": "c(person(\"Terry\", \"Therneau\", role = \"aut\", email = \"therneau@mayo.edu\"), person(\"Beth\", \"Atkinson\", role = c(\"aut\", \"cre\"), email = \"atkinson@mayo.edu\"), person(\"Brian\", \"Ripley\", role = \"trl\", email = \"ripley@stats.ox.ac.uk\", comment = \"producer of the initial R port, maintainer 1999-2017\"))", + "Date": "2026-03-26", + "Authors@R": "c(person(\"Terry\", \"Therneau\", role = \"aut\", email = \"therneau@mayo.edu\"), person(\"Beth\", \"Atkinson\", role = c(\"aut\", \"cre\"), email = \"atkinson@mayo.edu\"), person(\"Brian\", \"Ripley\", role = \"trl\", email = \"Brian.Ripley@R-project.org\", comment = \"producer of the initial R port, maintainer 1999-2017\"))", "Description": "Recursive partitioning for classification, regression and survival trees. An implementation of most of the functionality of the 1984 book by Breiman, Friedman, Olshen and Stone.", "Title": "Recursive Partitioning and Regression Trees", "Depends": [ @@ -6908,9 +6961,10 @@ "NeedsCompilation": "yes", "Author": "Terry Therneau [aut], Beth Atkinson [aut, cre], Brian Ripley [trl] (producer of the initial R port, maintainer 1999-2017)", "Maintainer": "Beth Atkinson ", - "Repository": "CRAN", + "Repository": "RSPM", "URL": "https://github.com/bethatkinson/rpart, https://cran.r-project.org/package=rpart", - "BugReports": "https://github.com/bethatkinson/rpart/issues" + "BugReports": "https://github.com/bethatkinson/rpart/issues", + "Encoding": "UTF-8" }, "rprojroot": { "Package": "rprojroot", @@ -7110,7 +7164,7 @@ }, "rvg": { "Package": "rvg", - "Version": "0.4.0", + "Version": "0.4.2", "Source": "Repository", "Type": "Package", "Title": "R Graphics Devices for 'Office' Vector Graphics Output", @@ -7123,9 +7177,9 @@ "R (>= 3.0)" ], "Imports": [ - "gdtools (>= 0.3.3)", + "gdtools (>= 0.5.0)", "grDevices", - "officer (>= 0.6.2)", + "officer (>= 0.7.4)", "Rcpp (>= 0.12.12)", "rlang", "systemfonts", @@ -7271,12 +7325,11 @@ }, "scatterplot3d": { "Package": "scatterplot3d", - "Version": "0.3-44", + "Version": "0.3-45", "Source": "Repository", - "Date": "2023-05-05", + "Date": "2026-02-23", "Title": "3D Scatter Plot", - "Author": "Uwe Ligges , Martin Maechler, Sarah Schnackenberg", - "Maintainer": "Uwe Ligges ", + "Authors@R": "c(person(given = \"Uwe\", family = \"Ligges\", role = c(\"aut\", \"cre\"), email = \"ligges@statistik.tu-dortmund.de\"), person(given = \"Martin\", family = \"Maechler\", role = \"aut\"), person(given = \"Sarah\", family = \"Schnackenberg\", role = \"aut\"))", "Description": "Plots a three dimensional (3D) point cloud.", "Depends": [ "R (>= 2.7.0)" @@ -7289,7 +7342,9 @@ "stats" ], "NeedsCompilation": "no", - "Repository": "CRAN" + "Author": "Uwe Ligges [aut, cre], Martin Maechler [aut], Sarah Schnackenberg [aut]", + "Maintainer": "Uwe Ligges ", + "Repository": "RSPM" }, "sets": { "Package": "sets", @@ -7318,11 +7373,11 @@ }, "sfsmisc": { "Package": "sfsmisc", - "Version": "1.1-23", + "Version": "1.1-24", "Source": "Repository", "Title": "Utilities from 'Seminar fuer Statistik' ETH Zurich", - "VersionNote": "Last CRAN: 1.1-22 on 2025-08-30; 1.1-21 on 2025-07-25; 1.1-20 on 2024-10-23; 1.1-19 on 2024-08-16", - "Date": "2025-11-20", + "VersionNote": "Last CRAN: 1.1-23 on 2025-11-20; CRAN: 1.1-22 on 2025-08-30; 1.1-21 on 2025-07-25", + "Date": "2026-05-14", "Authors@R": "c(person(\"Martin\",\"Maechler\", role=c(\"aut\",\"cre\"), email=\"maechler@stat.math.ethz.ch\", comment = c(ORCID = \"0000-0002-8685-9910\")) , person(\"Werner\", \"Stahel\", role = \"ctb\", comment = \"Functions: compresid2way(), f.robftest(), last(), p.scales(), p.dnorm()\") , person(\"Andreas\", \"Ruckstuhl\", role = \"ctb\", comment = \"Functions: p.arrows(), p.profileTraces(), p.res.2x()\") , person(\"Christian\", \"Keller\", role = \"ctb\", comment = \"Functions: histBxp(), p.tachoPlot()\") , person(\"Kjetil\", \"Halvorsen\", role = \"ctb\", comment = \"Functions: KSd(), ecdf.ksCI()\") , person(\"Alain\", \"Hauser\", role = \"ctb\", comment = \"Functions: cairoSwd(), is.whole(), toLatex.numeric()*\") , person(\"Christoph\", \"Buser\", role = \"ctb\", comment = \"to function Duplicated()\") , person(\"Lorenz\", \"Gygax\", role = \"ctb\", comment = \"to function p.res.2fact()\") , person(\"Bill\", \"Venables\", role = \"ctb\", comment = \"Functions: empty.dimnames(), primes()\") , person(\"Tony\", \"Plate\", role = \"ctb\", comment = \"to inv.seq()\") # minor contributors: , person(\"Isabelle\", \"Flückiger\", role = \"ctb\") , person(\"Marcel\", \"Wolbers\", role = \"ctb\") , person(\"Markus\", \"Keller\", role = \"ctb\") , person(\"Sandrine\", \"Dudoit\", role = \"ctb\") , person(\"Jane\", \"Fridlyand\", role = \"ctb\") , person(\"Greg\", \"Snow\", role = \"ctb\", comment = \"to loessDemo()\") , person(\"Henrik Aa.\", \"Nielsen\", role = \"ctb\", comment = \"to loessDemo()\") , person(\"Vincent\", \"Carey\", role = \"ctb\") , person(\"Ben\", \"Bolker\", role = \"ctb\") , person(\"Philippe\", \"Grosjean\", role = \"ctb\") , person(\"Frédéric\", \"Ibanez\", role = \"ctb\") , person(\"Caterina\", \"Savi\", role = \"ctb\") , person(\"Charles\", \"Geyer\", role = \"ctb\") , person(\"Jens\", \"Oehlschlägel\", role = \"ctb\") )", "Maintainer": "Martin Maechler ", "Description": "Useful utilities ['goodies'] from Seminar fuer Statistik ETH Zurich, some of which were ported from S-plus in the 1990s. For graphics, have pretty (Log-scale) axes eaxis(), an enhanced Tukey-Anscombe plot, combining histogram and boxplot, 2d-residual plots, a 'tachoPlot()', pretty arrows, etc. For robustness, have a robust F test and robust range(). For system support, notably on Linux, provides 'Sys.*()' functions with more access to system and CPU information. Finally, miscellaneous utilities such as simple efficient prime numbers, integer codes, Duplicated(), toLatex.numeric() and is.whole().", @@ -7374,9 +7429,9 @@ }, "statmod": { "Package": "statmod", - "Version": "1.5.1", + "Version": "1.5.2", "Source": "Repository", - "Date": "2025-10-08", + "Date": "2026-05-17", "Title": "Statistical Modeling", "Authors@R": "c(person(given = \"Gordon\", family = \"Smyth\", role = c(\"cre\", \"aut\"), email = \"smyth@wehi.edu.au\"), person(given = \"Lizhong\", family = \"Chen\", role = \"aut\"), person(given = \"Yifang\", family = \"Hu\", role = \"ctb\"), person(given = \"Peter\", family = \"Dunn\", role = \"ctb\"), person(given = \"Belinda\", family = \"Phipson\", role = \"ctb\"), person(given = \"Yunshun\", family = \"Chen\", role = \"ctb\"))", "Maintainer": "Gordon Smyth ", @@ -7611,7 +7666,7 @@ }, "systemfonts": { "Package": "systemfonts", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Type": "Package", "Title": "System Native Font Finding", @@ -7655,7 +7710,7 @@ "NeedsCompilation": "yes", "Author": "Thomas Lin Pedersen [aut, cre] (ORCID: ), Jeroen Ooms [aut] (ORCID: ), Devon Govett [aut] (Author of font-manager), Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Thomas Lin Pedersen ", - "Repository": "CRAN" + "Repository": "RSPM" }, "testthat": { "Package": "testthat", @@ -7721,7 +7776,7 @@ }, "textshaping": { "Package": "textshaping", - "Version": "1.0.4", + "Version": "1.0.5", "Source": "Repository", "Title": "Bindings to the 'HarfBuzz' and 'Fribidi' Libraries for Text Shaping", "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", @@ -7761,7 +7816,7 @@ "NeedsCompilation": "yes", "Author": "Thomas Lin Pedersen [cre, aut] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Thomas Lin Pedersen ", - "Repository": "CRAN" + "Repository": "RSPM" }, "tibble": { "Package": "tibble", @@ -7974,7 +8029,7 @@ }, "timeDate": { "Package": "timeDate", - "Version": "4051.111", + "Version": "4052.112", "Source": "Repository", "Title": "Rmetrics - Chronological and Calendar Objects", "Authors@R": "c(person(\"Diethelm\", \"Wuertz\", role=\"aut\", comment = \"original code\") , person(\"Tobias\", \"Setz\", role = c(\"aut\"), email = \"tobias.setz@live.com\") , person(\"Yohan\", \"Chalabi\", role = \"aut\") , person(\"Martin\",\"Maechler\", role = \"ctb\", email = \"maechler@stat.math.ethz.ch\", comment = c(ORCID = \"0000-0002-8685-9910\")) , person(given = c(\"Joe\", \"W.\"), family = \"Byers\", role = \"ctb\") , person(given = c(\"Georgi\", \"N.\"), family = \"Boshnakov\", role = c(\"cre\", \"aut\"), email = \"georgi.boshnakov@manchester.ac.uk\", comment = c(ORCID = \"0000-0003-2839-346X\")) )", @@ -7993,16 +8048,16 @@ ], "License": "GPL (>= 2)", "Encoding": "UTF-8", - "URL": "https://geobosh.github.io/timeDateDoc/ (doc), https://r-forge.r-project.org/scm/viewvc.php/pkg/timeDate/?root=rmetrics (devel), https://www.rmetrics.org", - "BugReports": "https://r-forge.r-project.org/projects/rmetrics", + "URL": "https://geobosh.github.io/timeDateDoc/ (doc), https://CRAN.R-project.org/package=timeDate, https://www.rmetrics.org", + "BugReports": "https://r-forge.r-project.org/tracker/?atid=633&group_id=156&func=browse", "NeedsCompilation": "no", "Author": "Diethelm Wuertz [aut] (original code), Tobias Setz [aut], Yohan Chalabi [aut], Martin Maechler [ctb] (ORCID: ), Joe W. Byers [ctb], Georgi N. Boshnakov [cre, aut] (ORCID: )", "Maintainer": "Georgi N. Boshnakov ", - "Repository": "CRAN" + "Repository": "RSPM" }, "timechange": { "Package": "timechange", - "Version": "0.3.0", + "Version": "0.4.0", "Source": "Repository", "Title": "Efficient Manipulation of Date-Times", "Authors@R": "c(person(\"Vitalie\", \"Spinu\", email = \"spinuvit@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Google Inc.\", role = c(\"ctb\", \"cph\")))", @@ -8019,18 +8074,18 @@ "testthat (>= 0.7.1.99)", "knitr" ], - "SystemRequirements": "A system with zoneinfo data (e.g. /usr/share/zoneinfo) as well as a recent-enough C++11 compiler (such as g++-4.8 or later). On Windows the zoneinfo included with R is used.", + "SystemRequirements": "A system with zoneinfo data (e.g. /usr/share/zoneinfo). On Windows the zoneinfo included with R is used.", "BugReports": "https://github.com/vspinu/timechange/issues", "URL": "https://github.com/vspinu/timechange/", "RoxygenNote": "7.2.1", "NeedsCompilation": "yes", "Author": "Vitalie Spinu [aut, cre], Google Inc. [ctb, cph]", "Maintainer": "Vitalie Spinu ", - "Repository": "CRAN" + "Repository": "RSPM" }, "tinytex": { "Package": "tinytex", - "Version": "0.58", + "Version": "0.59", "Source": "Repository", "Type": "Package", "Title": "Helper Functions to Install and Maintain TeX Live, and Compile LaTeX Documents", @@ -8051,32 +8106,7 @@ "NeedsCompilation": "no", "Author": "Yihui Xie [aut, cre, cph] (ORCID: ), Posit Software, PBC [cph, fnd], Christophe Dervieux [ctb] (ORCID: ), Devon Ryan [ctb] (ORCID: ), Ethan Heinzen [ctb], Fernando Cagua [ctb]", "Maintainer": "Yihui Xie ", - "Repository": "CRAN" - }, - "tseries": { - "Package": "tseries", - "Version": "0.10-59", - "Source": "Repository", - "Title": "Time Series Analysis and Computational Finance", - "Authors@R": "c(person(\"Adrian\", \"Trapletti\", role = \"aut\", email = \"adrian@trapletti.org\"), person(\"Kurt\", \"Hornik\", role = c(\"aut\", \"cre\"), email = \"Kurt.Hornik@R-project.org\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(\"Blake\", \"LeBaron\", role = \"ctb\", comment = \"BDS test code\"))", - "Description": "Time series analysis and computational finance.", - "Depends": [ - "R (>= 3.4.0)" - ], - "Imports": [ - "graphics", - "stats", - "utils", - "quadprog", - "zoo", - "quantmod (>= 0.4-9)", - "jsonlite" - ], - "License": "GPL-2 | GPL-3", - "NeedsCompilation": "yes", - "Author": "Adrian Trapletti [aut], Kurt Hornik [aut, cre] (ORCID: ), Blake LeBaron [ctb] (BDS test code)", - "Maintainer": "Kurt Hornik ", - "Repository": "CRAN" + "Repository": "RSPM" }, "urca": { "Package": "urca", @@ -8135,10 +8165,10 @@ }, "uuid": { "Package": "uuid", - "Version": "1.2-1", + "Version": "1.2-2", "Source": "Repository", "Title": "Tools for Generating and Handling of UUIDs", - "Author": "Simon Urbanek [aut, cre, cph] (https://urbanek.org, ), Theodore Ts'o [aut, cph] (libuuid)", + "Author": "Simon Urbanek [aut, cre, cph] (https://urbanek.org, ORCID: ), Theodore Ts'o [aut, cph] (libuuid)", "Maintainer": "Simon Urbanek ", "Authors@R": "c(person(\"Simon\", \"Urbanek\", role=c(\"aut\",\"cre\",\"cph\"), email=\"Simon.Urbanek@r-project.org\", comment=c(\"https://urbanek.org\", ORCID=\"0000-0003-2297-1732\")), person(\"Theodore\",\"Ts'o\", email=\"tytso@thunk.org\", role=c(\"aut\",\"cph\"), comment=\"libuuid\"))", "Depends": [ @@ -8149,7 +8179,8 @@ "URL": "https://www.rforge.net/uuid", "BugReports": "https://github.com/s-u/uuid/issues", "NeedsCompilation": "yes", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "vcd": { "Package": "vcd", @@ -8187,7 +8218,7 @@ }, "vctrs": { "Package": "vctrs", - "Version": "0.7.0", + "Version": "0.7.3", "Source": "Repository", "Title": "Vector Helpers", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"aut\"), person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = c(\"aut\", \"cre\")), person(\"data.table team\", role = \"cph\", comment = \"Radix sort based on data.table's forder() and their contribution to R's order()\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", @@ -8227,12 +8258,13 @@ "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "Encoding": "UTF-8", + "KeepSource": "true", "Language": "en-GB", "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", "Author": "Hadley Wickham [aut], Lionel Henry [aut], Davis Vaughan [aut, cre], data.table team [cph] (Radix sort based on data.table's forder() and their contribution to R's order()), Posit Software, PBC [cph, fnd]", "Maintainer": "Davis Vaughan ", - "Repository": "CRAN" + "Repository": "RSPM" }, "vdiffr": { "Package": "vdiffr", @@ -8311,11 +8343,11 @@ }, "viridisLite": { "Package": "viridisLite", - "Version": "0.4.2", + "Version": "0.4.3", "Source": "Repository", "Type": "Package", "Title": "Colorblind-Friendly Color Maps (Lite Version)", - "Date": "2023-05-02", + "Date": "2026-02-03", "Authors@R": "c( person(\"Simon\", \"Garnier\", email = \"garnier@njit.edu\", role = c(\"aut\", \"cre\")), person(\"Noam\", \"Ross\", email = \"noam.ross@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Bob\", \"Rudis\", email = \"bob@rud.is\", role = c(\"ctb\", \"cph\")), person(\"Marco\", \"Sciaini\", email = \"sciaini.marco@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Antônio Pedro\", \"Camargo\", role = c(\"ctb\", \"cph\")), person(\"Cédric\", \"Scherer\", email = \"scherer@izw-berlin.de\", role = c(\"ctb\", \"cph\")) )", "Maintainer": "Simon Garnier ", "Description": "Color maps designed to improve graph readability for readers with common forms of color blindness and/or color vision deficiency. The color maps are also perceptually-uniform, both in regular form and also when converted to black-and-white for printing. This is the 'lite' version of the 'viridis' package that also contains 'ggplot2' bindings for discrete and continuous color and fill scales and can be found at .", @@ -8332,10 +8364,10 @@ ], "URL": "https://sjmgarnier.github.io/viridisLite/, https://github.com/sjmgarnier/viridisLite/", "BugReports": "https://github.com/sjmgarnier/viridisLite/issues/", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", "Author": "Simon Garnier [aut, cre], Noam Ross [ctb, cph], Bob Rudis [ctb, cph], Marco Sciaini [ctb, cph], Antônio Pedro Camargo [ctb, cph], Cédric Scherer [ctb, cph]", - "Repository": "CRAN" + "Repository": "RSPM" }, "waldo": { "Package": "waldo", @@ -8444,7 +8476,7 @@ }, "xfun": { "Package": "xfun", - "Version": "0.56", + "Version": "0.57", "Source": "Repository", "Type": "Package", "Title": "Supporting Functions for Packages Maintained by 'Yihui Xie'", @@ -8488,7 +8520,7 @@ "NeedsCompilation": "yes", "Author": "Yihui Xie [aut, cre, cph] (ORCID: , URL: https://yihui.org), Wush Wu [ctb], Daijiang Li [ctb], Xianying Tan [ctb], Salim Brüggemann [ctb] (ORCID: ), Christophe Dervieux [ctb]", "Maintainer": "Yihui Xie ", - "Repository": "CRAN" + "Repository": "RSPM" }, "xml2": { "Package": "xml2", @@ -8532,7 +8564,7 @@ }, "xts": { "Package": "xts", - "Version": "0.14.1", + "Version": "0.14.2", "Source": "Repository", "Type": "Package", "Title": "eXtensible Time Series", @@ -8563,7 +8595,7 @@ "NeedsCompilation": "yes", "Author": "Jeffrey A. Ryan [aut, cph], Joshua M. Ulrich [cre, aut], Ross Bennett [ctb], Corwin Joy [ctb]", "Maintainer": "Joshua M. Ulrich ", - "Repository": "CRAN" + "Repository": "RSPM" }, "yaml": { "Package": "yaml", diff --git a/tests/testthat.R b/tests/testthat.R index 8006c7d47..39e05b46f 100644 --- a/tests/testthat.R +++ b/tests/testthat.R @@ -25,6 +25,5 @@ jaspTools::runTestsTravis(module = getwd()) # jaspTools::testAnalysis("multivariateControlCharts") - # Create unit tests from examples # jaspTools::makeTestsFromExamples() diff --git a/tests/testthat/_snaps/attributesCharts/reference_plotobject/c-chart.rds b/tests/testthat/_snaps/attributesCharts/reference_plotobject/c-chart.rds new file mode 100644 index 000000000..f5a79e6d7 Binary files /dev/null and b/tests/testthat/_snaps/attributesCharts/reference_plotobject/c-chart.rds differ diff --git a/tests/testthat/_snaps/attributesCharts/reference_plotobject/individuals-and-moving-range-chart-subplot-1.rds b/tests/testthat/_snaps/attributesCharts/reference_plotobject/individuals-and-moving-range-chart-subplot-1.rds new file mode 100644 index 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a/tests/testthat/_snaps/variablesChartsSubgroups/reference_plotobject/x-bar-s-reportw1-subplot-6.rds b/tests/testthat/_snaps/variablesChartsSubgroups/reference_plotobject/x-bar-s-reportw1-subplot-6.rds new file mode 100644 index 000000000..2a43d99ce Binary files /dev/null and b/tests/testthat/_snaps/variablesChartsSubgroups/reference_plotobject/x-bar-s-reportw1-subplot-6.rds differ diff --git a/tests/testthat/test-processCapabilityStudies.R b/tests/testthat/test-processCapabilityStudies.R index 4e1db09cc..1b635a424 100644 --- a/tests/testthat/test-processCapabilityStudies.R +++ b/tests/testthat/test-processCapabilityStudies.R @@ -174,7 +174,6 @@ test_that("LF2.9 (Normal) Basic tests of Summary of X-bar & R control chart with }) #### Manual subgroups #### - ##### Without stages (verified with Minitab) #### options <- analysisOptions("processCapabilityStudies") options$testSet <- "jaspDefault"