Genome Imputation by Aligning Coalescent Trees with Genealogies

Development

Please run the tests in run-tests.sh before committing. Add this script to your pre-commit hook:

cd .git/hooks
ln -s ../../run-tests.sh ./pre-commit

Dependencies:

To access the relevant msprime functionalities, please install:

pip install --user newick
pip install --user git+https://github.com/DomNelson/msprime.git@pedigree_ind_fix