I am make igv report using version 1.16.0. The --sort BASE does work for SNVs , while not work for indels.
create_report generic.tsv \ --fasta hg19.fasta \ --sequence 1 --begin 2 --end 3 \ --sort BASE \ --info-columns chr start end ref alt \ --flanking 1000 \ --track-config igv.json \ --output igv.html
This is for SNV: the html also pop out an error "Cannot read properties of undefined (reading 'del')"
And for indel:
Please give some advice, thanks.
I am make igv report using version
1.16.0. The--sort BASEdoes work for SNVs , while not work for indels.create_report generic.tsv \ --fasta hg19.fasta \ --sequence 1 --begin 2 --end 3 \ --sort BASE \ --info-columns chr start end ref alt \ --flanking 1000 \ --track-config igv.json \ --output igv.htmlThis is for SNV: the html also pop out an error "
Cannot read properties of undefined (reading 'del')"And for indel:
Please give some advice, thanks.