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Improve display of presentation/immunogenicity data in pVACtools

Status: Open.

#1280 In griffithlab/pVACtools;

· susannasiebert opened on Aug 13, 2025

Improve handling of immunogenicity and presentation data

Status: Open.

#1281 In griffithlab/pVACtools;

· susannasiebert opened on Aug 13, 2025

Rename Mutation output column to Index in pVACbind and pVACfuse

Status: Open.

#1323 In griffithlab/pVACtools;

· susannasiebert opened on Oct 10, 2025

Investigate PRIME prediction algorithm

prediction_algorithms

Status: Open.

#1029 In griffithlab/pVACtools;

· jhundal opened on Sep 25, 2023

Add support for MixMHCpred?

enhancement

grant

prediction_algorithms

Status: Open.

#240 In griffithlab/pVACtools;

· malachig opened on Jan 3, 2019

Consider integration of MixMHCPred2

prediction_algorithms

Status: Open.

#1093 In griffithlab/pVACtools;

· malachig opened on Apr 15, 2024

ML predictor integration into pvacseq

Status: Draft (not ready).

griffithlab/pVACtoolsnumber 1333

#1333 In griffithlab/pVACtools;

· jyao36 opened on Nov 3, 2025

Calculate pVACtools rank scores

Status: Open (in progress).

griffithlab/pVACtoolsnumber 1338

#1338 In griffithlab/pVACtools;

· ldhtnp opened on Nov 13, 2025

Remove --exclude-NA option in pVACtools 7.0

Status: Open.

#1343 In griffithlab/pVACtools;

· susannasiebert opened on Nov 25, 2025

Update percentile threshold behavior for pVACvector in 7.0

Status: Open.

#1344 In griffithlab/pVACtools;

· susannasiebert opened on Nov 25, 2025