update

Author: giocoal

.gitattributes

@@ -0,0 +1,5 @@
+* linguist-vendored
+*.Rmd linguist-vendored=false linguist-language=R
+*.ipynb linguist-vendored=false linguist-language=Python
+*.R linguist-vendored=false
+*.py linguist-vendored=false

.gitignore

@@ -0,0 +1,191 @@
+# Folders
+files/pca
+files/preds_backups
+files/repos
+files/submission_outputs
+files/submissions
+docs/MeetingSlides
+docs/MeetingSlides
+scripts/algonauts_2023_challenge_submission
+notebooks/algonauts_2023_challenge_submission
+notebooks/util_algonauts_2023_challenge_reconstruct_tutorial.ipynb
+notebooks/util_algonauts_2023_challenge_tutorial.ipynb
+docs/
+masks_surfaces_subj1_test.ipynb
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/subj-wise_correlation_boxplot.html
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/subj-wise_correlation_boxplot.png
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/subj-wise_correlation_histogram.html
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/subj-wise_correlation_histogram.png
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/val_results.csv
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/val_scores_subj_hemisphere_ROI.txt
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/val_scores_subj_hemisphere.txt
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/val_scores.txt
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/test_predictions/subj7_0.54767_resto_subj1_0.6.zip
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/test_predictions/subj01/lh_pred_test.npy
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/test_predictions/subj01/rh_pred_test.npy
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/test_predictions/subj02/lh_pred_test.npy
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/test_predictions/subj02/rh_pred_test.npy
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/test_predictions/subj03/lh_pred_test.npy
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/test_predictions/subj03/rh_pred_test.npy
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/test_predictions/subj04/lh_pred_test.npy
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/test_predictions/subj04/rh_pred_test.npy
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/test_predictions/subj05/lh_pred_test.npy
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/test_predictions/subj05/rh_pred_test.npy
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/test_predictions/subj06/lh_pred_test.npy
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/test_predictions/subj06/rh_pred_test.npy
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/test_predictions/subj07/lh_pred_test.npy
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/test_predictions/subj07/rh_pred_test.npy
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/test_predictions/subj08/lh_pred_test.npy
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/test_predictions/subj08/rh_pred_test.npy
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/val_correlations/subj07/lh_corr_val.npy
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/val_correlations/subj07/rh_corr_val.npy
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/val_imgs/subj07/box_pearson_20230819172457.html
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/val_imgs/subj07/box_pearson_20230819172457.png
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/val_imgs/subj07/histogram_pearson_20230819172455.html
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/val_imgs/subj07/histogram_pearson_20230819172455.png
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/val_imgs/subj07/scores_subj_hemishphere_roi.txt
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/val_predictions/subj07/lh_pred_val.npy
+files/test_folder/(2023-08-19_16-29)-config_subj7_0.54767/val_predictions/subj07/rh_pred_val.npy
+files/donwsampled_features
+files/donwsampled_features/1+dino_res50+layer2.3.relu+dino_resnet50_preprocess+2048_test.npy
+files/donwsampled_features/1+dino_res50+layer2.3.relu+dino_resnet50_preprocess+2048_train.npy
+files/donwsampled_features/1+dino_res50+layer2.3.relu+dino_resnet50_preprocess+2048_val.npy
+files/donwsampled_features/1+alexnet+features.10+imagenet_transform_alt+512_test.npy
+files/donwsampled_features/1+alexnet+features.10+imagenet_transform_alt+512_train.npy
+files/donwsampled_features/1+alexnet+features.10+imagenet_transform_alt+512_val.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.9+ViT_GPT2_transform+512_test.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.9+ViT_GPT2_transform+512_train.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.9+ViT_GPT2_transform+512_val.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.10+ViT_GPT2_transform+512_test.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.10+ViT_GPT2_transform+512_train.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.10+ViT_GPT2_transform+512_val.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.11+ViT_GPT2_transform+512_test.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.11+ViT_GPT2_transform+512_train.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.11+ViT_GPT2_transform+512_val.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.12+ViT_GPT2_transform+512_test.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.12+ViT_GPT2_transform+512_train.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.12+ViT_GPT2_transform+512_val.npy
+files/donwsampled_features/1+alexnet+features.11+imagenet_transform_alt+512_test.npy
+files/donwsampled_features/1+alexnet+features.11+imagenet_transform_alt+512_train.npy
+files/donwsampled_features/1+alexnet+features.11+imagenet_transform_alt+512_val.npy
+files/donwsampled_features/1+alexnet+features.12+imagenet_transform_alt+512_test.npy
+files/donwsampled_features/1+alexnet+features.12+imagenet_transform_alt+512_train.npy
+files/donwsampled_features/1+alexnet+features.12+imagenet_transform_alt+512_val.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.5+ViT_GPT2_transform+2048_test.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.5+ViT_GPT2_transform+2048_train.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.5+ViT_GPT2_transform+2048_val.npy
+encoding_evaluation_full_mixedlayers.py
+files/donwsampled_features/1+dino_res50+layer1.0.relu+dino_resnet50_preprocess+512_test.npy
+files/donwsampled_features/1+dino_res50+layer1.0.relu+dino_resnet50_preprocess+512_train.npy
+files/donwsampled_features/1+dino_res50+layer1.0.relu+dino_resnet50_preprocess+512_val.npy
+files/donwsampled_features/1+dino_res50+layer1.1.relu+dino_resnet50_preprocess+512_test.npy
+files/donwsampled_features/1+dino_res50+layer1.1.relu+dino_resnet50_preprocess+512_train.npy
+files/donwsampled_features/1+dino_res50+layer1.1.relu+dino_resnet50_preprocess+512_val.npy
+files/donwsampled_features/1+dino_res50+layer1.2.relu+dino_resnet50_preprocess+512_test.npy
+files/donwsampled_features/1+dino_res50+layer1.2.relu+dino_resnet50_preprocess+512_train.npy
+files/donwsampled_features/1+dino_res50+layer1.2.relu+dino_resnet50_preprocess+512_val.npy
+files/donwsampled_features/1+dino_res50+layer2.0.relu+dino_resnet50_preprocess+512_test.npy
+files/donwsampled_features/1+dino_res50+layer2.0.relu+dino_resnet50_preprocess+512_train.npy
+files/donwsampled_features/1+dino_res50+layer2.0.relu+dino_resnet50_preprocess+512_val.npy
+files/donwsampled_features/1+DINOv2l+15+dinov2_transform_V2+512_test.npy
+files/donwsampled_features/1+DINOv2l+15+dinov2_transform_V2+512_train.npy
+files/donwsampled_features/1+DINOv2l+15+dinov2_transform_V2+512_val.npy
+files/donwsampled_features/1+DINOv2l+16+dinov2_transform_V2+512_test.npy
+files/donwsampled_features/1+DINOv2l+16+dinov2_transform_V2+512_train.npy
+files/donwsampled_features/1+DINOv2l+16+dinov2_transform_V2+512_val.npy
+files/donwsampled_features/1+DINOv2l+17+dinov2_transform_V2+512_test.npy
+files/donwsampled_features/1+DINOv2l+17+dinov2_transform_V2+512_train.npy
+files/donwsampled_features/1+DINOv2l+17+dinov2_transform_V2+512_val.npy
+files/donwsampled_features/1+DINOv2l+18+dinov2_transform_V2+512_test.npy
+files/donwsampled_features/1+DINOv2l+18+dinov2_transform_V2+512_train.npy
+files/donwsampled_features/1+DINOv2l+18+dinov2_transform_V2+512_val.npy
+files/donwsampled_features/1+DINOv2l+19+dinov2_transform_V2+512_test.npy
+files/donwsampled_features/1+DINOv2l+19+dinov2_transform_V2+512_train.npy
+files/donwsampled_features/1+DINOv2l+19+dinov2_transform_V2+512_val.npy
+files/donwsampled_features/1+DINOv2l+20+dinov2_transform_V2+512_test.npy
+files/donwsampled_features/1+DINOv2l+20+dinov2_transform_V2+512_train.npy
+files/donwsampled_features/1+DINOv2l+20+dinov2_transform_V2+512_val.npy
+files/donwsampled_features/1+DINOv2l+21+dinov2_transform_V2+512_test.npy
+files/donwsampled_features/1+DINOv2l+21+dinov2_transform_V2+512_train.npy
+files/donwsampled_features/1+DINOv2l+21+dinov2_transform_V2+512_val.npy
+files/donwsampled_features/1+DINOv2l+22+dinov2_transform_V2+512_test.npy
+files/donwsampled_features/1+DINOv2l+22+dinov2_transform_V2+512_train.npy
+files/donwsampled_features/1+DINOv2l+22+dinov2_transform_V2+512_val.npy
+files/donwsampled_features/1+DINOv2l+22+dinov2_transform_V2+9999999_test.npy
+files/donwsampled_features/1+DINOv2l+22+dinov2_transform_V2+9999999_train.npy
+files/donwsampled_features/1+DINOv2l+22+dinov2_transform_V2+9999999_val.npy
+files/donwsampled_features/1+DINOv2l+23+dinov2_transform_V2+512_test.npy
+files/donwsampled_features/1+DINOv2l+23+dinov2_transform_V2+512_train.npy
+files/donwsampled_features/1+DINOv2l+23+dinov2_transform_V2+512_val.npy
+files/donwsampled_features/1+DINOv2l+23+dinov2_transform_V2+9999999_test.npy
+files/donwsampled_features/1+DINOv2l+23+dinov2_transform_V2+9999999_train.npy
+files/donwsampled_features/1+DINOv2l+23+dinov2_transform_V2+9999999_val.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.5+ViT_GPT2_transform+2048_test.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.5+ViT_GPT2_transform+2048_train.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.5+ViT_GPT2_transform+2048_val.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.6+ViT_GPT2_transform+2048_test.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.6+ViT_GPT2_transform+2048_train.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.6+ViT_GPT2_transform+2048_val.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.7+ViT_GPT2_transform+2048_test.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.7+ViT_GPT2_transform+2048_train.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.7+ViT_GPT2_transform+2048_val.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.8+ViT_GPT2_transform+2048_test.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.8+ViT_GPT2_transform+2048_train.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.8+ViT_GPT2_transform+2048_val.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.9+ViT_GPT2_transform+2048_test.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.9+ViT_GPT2_transform+2048_train.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.9+ViT_GPT2_transform+2048_val.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.10+ViT_GPT2_transform+2048_test.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.10+ViT_GPT2_transform+2048_train.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.10+ViT_GPT2_transform+2048_val.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.11+ViT_GPT2_transform+2048_test.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.11+ViT_GPT2_transform+2048_train.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.11+ViT_GPT2_transform+2048_val.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.12+ViT_GPT2_transform+2048_test.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.12+ViT_GPT2_transform+2048_train.npy
+files/donwsampled_features/1+ViT_GPT2+decoder.12+ViT_GPT2_transform+2048_val.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.5+ViT_GPT2_transform+512_test.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.5+ViT_GPT2_transform+512_train.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.5+ViT_GPT2_transform+512_val.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.6+ViT_GPT2_transform+512_test.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.6+ViT_GPT2_transform+512_train.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.6+ViT_GPT2_transform+512_val.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.6+ViT_GPT2_transform+2048_test.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.6+ViT_GPT2_transform+2048_train.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.6+ViT_GPT2_transform+2048_val.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.7+ViT_GPT2_transform+2048_test.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.7+ViT_GPT2_transform+2048_train.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.7+ViT_GPT2_transform+2048_val.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.8+ViT_GPT2_transform+512_test.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.8+ViT_GPT2_transform+512_train.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.8+ViT_GPT2_transform+512_val.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.8+ViT_GPT2_transform+2048_test.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.8+ViT_GPT2_transform+2048_train.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.8+ViT_GPT2_transform+2048_val.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.9+ViT_GPT2_transform+512_test.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.9+ViT_GPT2_transform+512_train.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.9+ViT_GPT2_transform+512_val.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.9+ViT_GPT2_transform+2048_test.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.9+ViT_GPT2_transform+2048_train.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.9+ViT_GPT2_transform+2048_val.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.10+ViT_GPT2_transform+512_test.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.10+ViT_GPT2_transform+512_train.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.10+ViT_GPT2_transform+512_val.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.10+ViT_GPT2_transform+2048_test.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.10+ViT_GPT2_transform+2048_train.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.10+ViT_GPT2_transform+2048_val.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.11+ViT_GPT2_transform+512_test.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.11+ViT_GPT2_transform+512_train.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.11+ViT_GPT2_transform+512_val.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.11+ViT_GPT2_transform+2048_test.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.11+ViT_GPT2_transform+2048_train.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.11+ViT_GPT2_transform+2048_val.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.12+ViT_GPT2_transform+512_test.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.12+ViT_GPT2_transform+512_train.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.12+ViT_GPT2_transform+512_val.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.12+ViT_GPT2_transform+2048_test.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.12+ViT_GPT2_transform+2048_train.npy
+files/donwsampled_features/1+ViT_GPT2+encoder.12+ViT_GPT2_transform+2048_val.npy
+files/donwsampled_features/1+dino_res50+layer2.1.relu+dino_resnet50_preprocess+512_test.npy
+files/donwsampled_features/1+dino_res50+layer2.1.relu+dino_resnet50_preprocess+512_train.npy
+files/donwsampled_features/1+dino_res50+layer2.1.relu+dino_resnet50_preprocess+512_val.npy

README.MD

@@ -0,0 +1,12 @@
+# Visual Cortex Encoder
+
+This is a repository for [Algonauts2023 competition](http://algonauts.csail.mit.edu).  
+Developed by [@giocoal](https://github.com/giocoal)
+
+## Dataset
+
+You may access the dataset from [here](https://naturalscenesdataset.org)
+
+## Results
+
+### Experiments: Preatrained Feature Modelling