Skip to content
This repository was archived by the owner on Jan 31, 2020. It is now read-only.
This repository was archived by the owner on Jan 31, 2020. It is now read-only.

pindel fails with error while loading shared libraries: libhts.so.3 #116

@myourshaw

Description

@myourshaw

I had to compile pindel using the suggestions for htslib from the FAQ, and the patches mentioned in Issue 111 Problems in installing pindel, including correcting the #include <math.h> misleading instruction.
I got "Pindel successfully compiled." But when I ran pindel, I got this error:

./pindel: error while loading shared libraries: libhts.so.3: cannot open shared object file: No such file or directory

libhts.so.3 in fact exists in /usr/local/lib and also in the directory parallel to pindel, /home/myourshaw/apps/pindeltest/htslib.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type
    No fields configured for issues without a type.

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions