@@ -736,7 +736,7 @@ def _generate_executable(
736
736
--bind "job_directory":{ staging_directory } \\
737
737
--bind "persistence_directory":{ persistence_directory } \\
738
738
--pwd { staging_directory } \\
739
- { pulsar_submit_command . image } \\
739
+ https://github.com/kysrpex/galaxyproject-pulsar/releases/download/27ec4e75/[email protected] \\
740
740
{ pulsar_submit_command .command } { " " .join (pulsar_submit_command .args )}
741
741
742
742
# copy symlinks to the job directory
@@ -760,10 +760,11 @@ def _generate_executable(
760
760
--bind "job_directory":{ staging_directory } \\
761
761
--bind "persistence_directory":{ persistence_directory } \\
762
762
--pwd { tool_container_command .working_directory } \\
763
- { pulsar_manifest_command . image } \\
763
+ https://github.com/kysrpex/galaxyproject-pulsar/releases/download/27ec4e75/[email protected] \\
764
764
{ pulsar_manifest_command .command } { " " .join (pulsar_manifest_command .args )}
765
765
766
766
cat job_directory/{ output_manifest_path } | jq -r '.[] | "\(.from_path | sub("^{ job_directory } /"; "job_directory/")) \(.url | capture("^(?<protocolurlhostport>[^:]+://[^/]+)(?<fileandmetadataoptions>/.*)") | "\(.protocolurlhostport);overwrite=yes\(.fileandmetadataoptions)" )"' > output.files
767
+ sed -i 's|https://galaxy-3923.local|http://b3bb955b30f267.lhr.life|g' output.files
767
768
""" ).encode ("utf-8" )
768
769
769
770
def _generate_job_description (
@@ -817,7 +818,7 @@ def _generate_job_description(
817
818
name .text = str (Path ("arc_staging_directory" ) / Path (input_ ["to_path" ]).relative_to (job_directory ))
818
819
source = SubElement (input_file , "Source" )
819
820
uri = SubElement (source , "URI" )
820
- uri .text = input_ ["url" ]
821
+ uri .text = input_ ["url" ]. replace ( "https://galaxy-3923.local" , "http://b3bb955b30f267.lhr.life" )
821
822
output_file = SubElement (data_staging , "OutputFile" )
822
823
output_file_name = SubElement (output_file , "Name" )
823
824
output_file_name .text = f"@output.files"
0 commit comments