From f8f4f1de28a58951d95f9a4960af57e3cfa5c11a Mon Sep 17 00:00:00 2001
From: iimpulse <Michael.Gargano@jax.org>
Date: Tue, 9 Sep 2025 09:36:36 -0600
Subject: [PATCH 1/3] update deploy script to be more resilient

---
 deploy-python.sh | 16 ++++++++--------
 1 file changed, 8 insertions(+), 8 deletions(-)

diff --git a/deploy-python.sh b/deploy-python.sh
index 27e303a..5922792 100755
--- a/deploy-python.sh
+++ b/deploy-python.sh
@@ -13,13 +13,13 @@ cd $DIRECTORY || { echo "Deployment FAILED. Couldn't find directory" ; exit 1; }
 createVirtualEnvironment(){
   echo "Creating Python virtual environment at ${1}"
   python3 -m venv "${1}" &> /dev/null
-  if [ ${?} = 1 ]; then
+  if [ $? -ne 0 ]; then
     echo "Setup of Python virtual environment using 'python3 -m venv' failed. Trying 'virtualenv'"
     virtualenv "${1}" &> /dev/null
-  fi
-  if [ ${?} = 1 ]; then
-    echo "Deployment FAILED. Could not create Python virtual environment"
-    exit 1;
+    if [ $? -ne 0 ]; then
+      echo "Deployment FAILED. Could not create Python virtual environment"
+      exit 1;
+    fi
   fi
   echo "Virtual environment created successfully";
 }
@@ -40,9 +40,9 @@ python3 -m pip install build twine || { echo "Deployment FAILED. Failed to insta
 python3 -m build || { echo "Deployment FAILED. Building python package" ; exit 1; }
 # Deploy - Remove --repository testpypi flag for production.
 if [ "$1" = "release-prod" ]; then
-  python3 -m twine upload dist/*
+  python3 -m twine upload dist/* || { echo "Deployment FAILED. Could not upload."; exit 1; }
 elif [ "$1" = "release-test" ]; then
-  python3 -m twine upload --repository testpypi dist/*
+  python3 -m twine upload --repository testpypi dist/* || { echo "Deployment FAILED. Could not upload."; exit 1; }
 else
   echo "Python Release was prepared successfully. No release argument provided, use one of [release-prod, release-test] to make the production/test release."
 fi
@@ -52,4 +52,4 @@ echo "Cleaning up the build environment and the build files"
 deactivate
 rm -rf build dist ${TEMP_DIRECTORY_VIRTUAL_ENV}
 cd ..
-./mvnw clean
+./mvnw clean
\ No newline at end of file

From 0578a1d72dd64d5fce34e5cb2d4b204c5cc6a9b2 Mon Sep 17 00:00:00 2001
From: iimpulse <Michael.Gargano@jax.org>
Date: Tue, 9 Sep 2025 09:37:23 -0600
Subject: [PATCH 2/3] update protobuf plugin

---
 pom.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pom.xml b/pom.xml
index bf8d7d4..fc3d06b 100644
--- a/pom.xml
+++ b/pom.xml
@@ -174,7 +174,7 @@
             <plugin>
                 <groupId>io.github.ascopes</groupId>
                 <artifactId>protobuf-maven-plugin</artifactId>
-                <version>2.2.3</version>
+                <version>3.8.1</version>
 
                 <configuration>
                     <protocVersion>${protobuf.version}</protocVersion>

From 84bca6b3a26e5078bfa90cc79c2ad544a4d3a744 Mon Sep 17 00:00:00 2001
From: iimpulse <Michael.Gargano@jax.org>
Date: Tue, 9 Sep 2025 09:37:53 -0600
Subject: [PATCH 3/3] bring python version to current deployed

---
 python/pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/python/pyproject.toml b/python/pyproject.toml
index 2d93b9e..600b4d0 100644
--- a/python/pyproject.toml
+++ b/python/pyproject.toml
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "phenopackets"
-version = "2.0.2.post2"  # IMPORTANT: This must be kept in sync with `project.version` in the top-level `pom.xml`
+version = "2.0.2.post5"  # IMPORTANT: This must be kept in sync with `project.version` in the top-level `pom.xml`
 requires-python = ">=3.8"
 description = "Phenopacket Schema"
 readme = "README.rst"