merged with master

Author: tomasatdatabricks

python/sparkdl/estimators/keras_image_file_estimator.py

@@ -24,11 +24,11 @@
 import pyspark.ml.linalg as spla
 from pyspark.ml.param import Param, Params, TypeConverters
 
-from sparkdl.image.imageIO import imageStructToArray
 from sparkdl.param import (
     keyword_only, CanLoadImage, HasKerasModel, HasKerasOptimizer, HasKerasLoss, HasOutputMode,
     HasInputCol, HasInputImageNodeName, HasLabelCol, HasOutputNodeName, HasOutputCol)
 from sparkdl.transformers.keras_image import KerasImageFileTransformer
+from sparkdl.image.image import ImageSchema
 import sparkdl.utils.jvmapi as JVMAPI
 import sparkdl.utils.keras_model as kmutil
 
@@ -202,7 +202,7 @@ def _getNumpyFeaturesAndLabels(self, dataset):
         rows = image_df.collect()
         for row in rows:
             spimg = row[tmp_image_col]
-            features = imageStructToArray(spimg)
+            features = ImageSchema.toNDArray(spimg)
             localFeatures.append(features)
 
         if not localFeatures:  # NOTE(phi-dbq): pep-8 recommended against testing 0 == len(array)

python/sparkdl/image/image.py

@@ -27,6 +27,8 @@
 """
 
 import numpy as np
+from collections import namedtuple
+
 from pyspark import SparkContext
 from pyspark.sql.types import Row, _create_row, _parse_datatype_json_string
 from pyspark.sql import DataFrame, SparkSession
@@ -42,9 +44,23 @@ class _ImageSchema(object):
     def __init__(self):
         self._imageSchema = None
         self._ocvTypes = None
+        self._ocvTypesByName = None
+        self._ocvTypesByMode = None
         self._imageFields = None
         self._undefinedImageType = None
 
+    _OcvType = namedtuple("OcvType", ["name", "mode", "nChannels", "dataType", "nptype"])
+
+    _ocvToNumpyMap = {
+        "8U": np.dtype("uint8"),
+        "8S": np.dtype("int8"),
+        "16U": np.dtype('uint16'),
+        "16S": np.dtype('int16'),
+        "32S": np.dtype('int32'),
+        "32F": np.dtype('float32'),
+        "64F": np.dtype('float64')}
+    _numpyToOcvMap = {x[1]: x[0] for x in _ocvToNumpyMap.items()}
+
     @property
     def imageSchema(self):
         """
@@ -57,7 +73,7 @@ def imageSchema(self):
         """
 
         if self._imageSchema is None:
-            ctx = SparkContext._active_spark_context
+            ctx = SparkContext.getOrCreate()
             jschema = ctx._jvm.org.apache.spark.ml.image.ImageSchema.imageSchema()
             self._imageSchema = _parse_datatype_json_string(jschema.json())
         return self._imageSchema
@@ -71,11 +87,30 @@ def ocvTypes(self):
 
         .. versionadded:: 2.3.0
         """
-
         if self._ocvTypes is None:
-            ctx = SparkContext._active_spark_context
-            self._ocvTypes = dict(ctx._jvm.org.apache.spark.ml.image.ImageSchema.javaOcvTypes())
-        return self._ocvTypes
+            ctx = SparkContext.getOrCreate()
+            self._ocvTypes = [self._OcvType(name=x.name(),
+                                            mode=x.mode(),
+                                            nChannels=x.nChannels(),
+                                            dataType=x.dataType(),
+                                            nptype=self._ocvToNumpyMap[x.dataType()])
+                              for x in ctx._jvm.org.apache.spark.ml.image.ImageSchema.javaOcvTypes()]
+        return [x for x in self._ocvTypes]
+
+    def ocvTypeByName(self, name):
+        if self._ocvTypesByName is None:
+            self._ocvTypesByName = {x.name: x for x in self.ocvTypes}
+        if not name in self._ocvTypesByName:
+            raise ValueError(
+                "Unsupported image format, can not find matching OpenCvFormat for type = '%s'; currently supported formats = %s" %
+                (name, str(
+                    self._ocvTypesByName.keys())))
+        return self._ocvTypesByName[name]
+
+    def ocvTypeByMode(self, mode):
+        if self._ocvTypesByMode is None:
+            self._ocvTypesByMode = {x.mode: x for x in self.ocvTypes}
+        return self._ocvTypesByMode[mode]
 
     @property
     def imageFields(self):
@@ -88,7 +123,7 @@ def imageFields(self):
         """
 
         if self._imageFields is None:
-            ctx = SparkContext._active_spark_context
+            ctx = SparkContext.getOrCreate()
             self._imageFields = list(ctx._jvm.org.apache.spark.ml.image.ImageSchema.imageFields())
         return self._imageFields
 
@@ -101,7 +136,7 @@ def undefinedImageType(self):
         """
 
         if self._undefinedImageType is None:
-            ctx = SparkContext._active_spark_context
+            ctx = SparkContext.getOrCreate()
             self._undefinedImageType = \
                 ctx._jvm.org.apache.spark.ml.image.ImageSchema.undefinedImageType()
         return self._undefinedImageType
@@ -126,15 +161,20 @@ def toNDArray(self, image):
             raise ValueError(
                 "image argument should have attributes specified in "
                 "ImageSchema.imageSchema [%s]." % ", ".join(self.imageFields))
-
         height = image.height
         width = image.width
         nChannels = image.nChannels
+        ocvType = self.ocvTypeByMode(image.mode)
+        if nChannels != ocvType.nChannels:
+            raise ValueError(
+                "Unexpected number of channels, image has %d channels but OcvType '%s' expects %d channels." %
+                (nChannels, ocvType.name, ocvType.nChannels))
+        itemSz = ocvType.nptype.itemsize
         return np.ndarray(
             shape=(height, width, nChannels),
-            dtype=np.uint8,
+            dtype=ocvType.nptype,
             buffer=image.data,
-            strides=(width * nChannels, nChannels, 1))
+            strides=(width * nChannels * itemSz, nChannels * itemSz, itemSz))
 
     def toImage(self, array, origin=""):
         """
@@ -152,29 +192,29 @@ def toImage(self, array, origin=""):
                 "array argument should be numpy.ndarray; however, it got [%s]." % type(array))
 
         if array.ndim != 3:
-            raise ValueError("Invalid array shape")
+            raise ValueError("Invalid array shape %s" % str(array.shape))
 
         height, width, nChannels = array.shape
-        ocvTypes = ImageSchema.ocvTypes
-        if nChannels == 1:
-            mode = ocvTypes["CV_8UC1"]
-        elif nChannels == 3:
-            mode = ocvTypes["CV_8UC3"]
-        elif nChannels == 4:
-            mode = ocvTypes["CV_8UC4"]
-        else:
-            raise ValueError("Invalid number of channels")
+        dtype = array.dtype
+        if not dtype in self._numpyToOcvMap:
+            raise ValueError(
+                "Unexpected/unsupported array data type '%s', currently only supported formats are %s" %
+                (str(
+                    array.dtype), str(
+                    self._numpyToOcvMap.keys())))
+        ocvName = "CV_%sC%d" % (self._numpyToOcvMap[dtype], nChannels)
+        ocvType = self.ocvTypeByName(ocvName)
 
         # Running `bytearray(numpy.array([1]))` fails in specific Python versions
         # with a specific Numpy version, for example in Python 3.6.0 and NumPy 1.13.3.
         # Here, it avoids it by converting it to bytes.
-        data = bytearray(array.astype(dtype=np.uint8).ravel().tobytes())
+        data = bytearray(array.tobytes())
 
         # Creating new Row with _create_row(), because Row(name = value, ... )
         # orders fields by name, which conflicts with expected schema order
         # when the new DataFrame is created by UDF
         return _create_row(self.imageFields,
-                           [origin, height, width, nChannels, mode, data])
+                           [origin, height, width, nChannels, ocvType.mode, data])
 
     def readImages(self, path, recursive=False, numPartitions=-1,
                    dropImageFailures=False, sampleRatio=1.0, seed=0):
@@ -203,7 +243,7 @@ def readImages(self, path, recursive=False, numPartitions=-1,
         .. versionadded:: 2.3.0
         """
 
-        ctx = SparkContext._active_spark_context
+        ctx = SparkContext.getOrCreate()
         spark = SparkSession(ctx)
         image_schema = ctx._jvm.org.apache.spark.ml.image.ImageSchema
         jsession = spark._jsparkSession

python/sparkdl/image/imageIO.py

@@ -21,83 +21,12 @@
 from PIL import Image
 
 # pyspark
-from pyspark import Row
 from pyspark import SparkContext
-from sparkdl.image.image import ImageSchema
 from pyspark.sql.functions import udf
 from pyspark.sql.types import (
     BinaryType, IntegerType, StringType, StructField, StructType)
 
-
-# ImageType represents supported OpenCV types
-# fields:
-#   name - OpenCvMode
-#   ord - Ordinal of the corresponding OpenCV mode (stored in mode field of ImageSchema).
-#   nChannels - number of channels in the image
-#   dtype - data type of the image's array, sorted as a numpy compatible string.
-#
-#  NOTE: likely to be migrated to Spark ImageSchema code in the near future.
-_OcvType = namedtuple("OcvType", ["name", "ord", "nChannels", "dtype"])
-
-
-_supportedOcvTypes = (
-    _OcvType(name="CV_8UC1", ord=0, nChannels=1, dtype="uint8"),
-    _OcvType(name="CV_32FC1", ord=5, nChannels=1, dtype="float32"),
-    _OcvType(name="CV_8UC3", ord=16, nChannels=3, dtype="uint8"),
-    _OcvType(name="CV_32FC3", ord=21, nChannels=3, dtype="float32"),
-    _OcvType(name="CV_8UC4", ord=24, nChannels=4, dtype="uint8"),
-    _OcvType(name="CV_32FC4", ord=29, nChannels=4, dtype="float32"),
-)
-
-#  NOTE: likely to be migrated to Spark ImageSchema code in the near future.
-_ocvTypesByName = {m.name: m for m in _supportedOcvTypes}
-_ocvTypesByOrdinal = {m.ord: m for m in _supportedOcvTypes}
-
-
-def imageTypeByOrdinal(ord):
-    if not ord in _ocvTypesByOrdinal:
-        raise KeyError("unsupported image type with ordinal %d, supported OpenCV types = %s" % (
-            ord, str(_supportedOcvTypes)))
-    return _ocvTypesByOrdinal[ord]
-
-
-def imageTypeByName(name):
-    if not name in _ocvTypesByName:
-        raise KeyError("unsupported image type with name '%s', supported supported OpenCV types = %s" % (
-            name, str(_supportedOcvTypes)))
-    return _ocvTypesByName[name]
-
-
-def imageArrayToStruct(imgArray, origin=""):
-    """
-    Create a row representation of an image from an image array.
-
-    :param imgArray: ndarray, image data.
-    :return: Row, image as a DataFrame Row with schema==ImageSchema.
-    """
-    # Sometimes tensors have a leading "batch-size" dimension. Assume to be 1 if it exists.
-    if len(imgArray.shape) == 4:
-        if imgArray.shape[0] != 1:
-            raise ValueError(
-                "The first dimension of a 4-d image array is expected to be 1.")
-        imgArray = imgArray.reshape(imgArray.shape[1:])
-    imageType = _arrayToOcvMode(imgArray)
-    height, width, nChannels = imgArray.shape
-    data = bytearray(imgArray.tobytes())
-    return Row(origin=origin, mode=imageType.ord, height=height,
-               width=width, nChannels=nChannels, data=data)
-
-
-def imageStructToArray(imageRow):
-    """
-    Convert an image to a numpy array.
-
-    :param imageRow: Row, must use imageSchema.
-    :return: ndarray, image data.
-    """
-    imType = imageTypeByOrdinal(imageRow.mode)
-    shape = (imageRow.height, imageRow.width, imageRow.nChannels)
-    return np.ndarray(shape, imType.dtype, imageRow.data)
+from sparkdl.image.image import ImageSchema
 
 
 def imageStructToPIL(imageRow):
@@ -107,20 +36,20 @@ def imageStructToPIL(imageRow):
     :param imageRow: Row, must have ImageSchema
     :return PIL image
     """
-    imgType = imageTypeByOrdinal(imageRow.mode)
-    if imgType.dtype != 'uint8':
+    ary = ImageSchema.toNDArray(imageRow)
+    if ary.dtype != np.uint8:
         raise ValueError("Can not convert image of type " +
-                         imgType.dtype + " to PIL, can only deal with 8U format")
-    ary = imageStructToArray(imageRow)
+                         ary.dtype + " to PIL, can only deal with 8U format")
+
     # PIL expects RGB order, image schema is BGR
     # => we need to flip the order unless there is only one channel
-    if imgType.nChannels != 1:
+    if imageRow.nChannels != 1:
         ary = _reverseChannels(ary)
-    if imgType.nChannels == 1:
+    if imageRow.nChannels == 1:
         return Image.fromarray(obj=ary, mode='L')
-    elif imgType.nChannels == 3:
+    elif imageRow.nChannels == 3:
         return Image.fromarray(obj=ary, mode='RGB')
-    elif imgType.nChannels == 4:
+    elif imageRow.nChannels == 4:
         return Image.fromarray(obj=ary, mode='RGBA')
     else:
         raise ValueError("don't know how to convert " +
@@ -132,19 +61,6 @@ def PIL_to_imageStruct(img):
     return _reverseChannels(np.asarray(img))
 
 
-def _arrayToOcvMode(arr):
-    assert len(arr.shape) == 3, "Array should have 3 dimensions but has shape {}".format(
-        arr.shape)
-    num_channels = arr.shape[2]
-    if arr.dtype == "uint8":
-        name = "CV_8UC%d" % num_channels
-    elif arr.dtype == "float32":
-        name = "CV_32FC%d" % num_channels
-    else:
-        raise ValueError("Unsupported type '%s'" % arr.dtype)
-    return imageTypeByName(name)
-
-
 def fixColorChannelOrdering(currentOrder, imgAry):
     if currentOrder == 'RGB':
         return _reverseChannels(imgAry)
@@ -160,6 +76,24 @@ def fixColorChannelOrdering(currentOrder, imgAry):
             "Unexpected channel order, expected one of L,RGB,BGR but got " + currentChannelOrder)
 
 
+def _stripBatchSize(imgArray):
+    """
+    Strip batch size (if it's there) from a multi dimensional array.
+    Assumes batch size is the first coordinate and is equal to 1.
+    Batch size != 1 will cause an error.
+
+    :param imgArray: ndarray, image data.
+    :return: imgArray without the leading batch size
+    """
+    # Sometimes tensors have a leading "batch-size" dimension. Assume to be 1 if it exists.
+    if len(imgArray.shape) == 4:
+        if imgArray.shape[0] != 1:
+            raise ValueError(
+                "The first dimension of a 4-d image array is expected to be 1.")
+        imgArray = imgArray.reshape(imgArray.shape[1:])
+    return imgArray
+
+
 def _reverseChannels(ary):
     return ary[..., ::-1]
 
@@ -183,8 +117,8 @@ def _resizeImageAsRow(imgAsRow):
             return imgAsRow
         imgAsPil = imageStructToPIL(imgAsRow).resize(sz)
         # PIL is RGB based while image schema is BGR based => we need to flip the channels
-        imgAsArray = _reverseChannels(np.asarray(imgAsPil))
-        return imageArrayToStruct(imgAsArray, origin=imgAsRow.origin)
+        imgAsArray = PIL_to_imageStruct(imgAsPil)
+        return ImageSchema.toImage(imgAsArray, origin=imgAsRow.origin)
     return udf(_resizeImageAsRow, ImageSchema.imageSchema['image'].dataType)
 
 
@@ -242,7 +176,7 @@ def readImagesWithCustomFn(path, decode_f, numPartition=None):
 def _readImagesWithCustomFn(path, decode_f, numPartition, sc):
     def _decode(path, raw_bytes):
         try:
-            return imageArrayToStruct(decode_f(raw_bytes), origin=path)
+            return ImageSchema.toImage(decode_f(raw_bytes), origin=path)
         except BaseException:
             return None
     decodeImage = udf(_decode, ImageSchema.imageSchema['image'].dataType)

python/sparkdl/param/image_params.py

@@ -22,8 +22,7 @@
 from sparkdl.image.image import ImageSchema
 from pyspark.ml.param import Param, Params, TypeConverters
 from pyspark.sql.functions import udf
-from sparkdl.image.imageIO import imageArrayToStruct
-from sparkdl.image.imageIO import _reverseChannels
+from sparkdl.image.imageIO import _reverseChannels, _stripBatchSize
 from sparkdl.param import SparkDLTypeConverters
 
 OUTPUT_MODES = ["vector", "image"]
@@ -95,10 +94,10 @@ def loadImagesInternal(self, dataframe, inputCol):
         # Load from external resources can fail, so we should allow None to be returned
 
         def load_image_uri_impl(uri):
-            try:
-                return imageArrayToStruct(_reverseChannels(loader(uri)))
-            except BaseException:  # pylint: disable=bare-except
-                return None
+            # try:
+                return ImageSchema.toImage(_reverseChannels(_stripBatchSize(loader(uri))))
+            # except BaseException:  # pylint: disable=bare-except
+            #     return None
         load_udf = udf(load_image_uri_impl, ImageSchema.imageSchema['image'].dataType)
         return dataframe.withColumn(self._loadedImageCol(), load_udf(dataframe[inputCol]))