Merge pull request #269 from databio/dev

v0.11.2 release

Author: donaldcampbelljr

docs/changelog.md

@@ -1,6 +1,11 @@
 # Change log
 All notable changes to this project will be documented in this file.
 
+## [0.11.2] -- 2024-01-22
+
+### Fixed
+ - fix fastqc path Issue #268
+
 ## [0.11.1] -- 2024-01-17
 
 ### Fixed

pipelines/pepatac.py

@@ -5,7 +5,7 @@
 
 __author__ = ["Jin Xu", "Nathan Sheffield", "Jason Smith"]
 __email__ = "[email protected]"
-__version__ = "0.11.1"
+__version__ = "0.11.2"
 
 
 from argparse import ArgumentParser
@@ -798,9 +798,9 @@ def main():
     trimmed_fastq_R2 = trimming_prefix + "_R2_trim.fastq"
     fastqc_folder = os.path.join(param.outfolder, "fastqc")
     fastqc_report = os.path.join(fastqc_folder,
-        trimming_prefix + "_R1_trim_fastqc.html")
+        args.sample_name + "_R1_trim_fastqc.html")
     fastqc_report_R2 = os.path.join(fastqc_folder,
-        trimming_prefix + "_R2_trim_fastqc.html")
+        args.sample_name + "_R2_trim_fastqc.html")
     if ngstk.check_command(tools.fastqc):
         ngstk.make_dir(fastqc_folder)