update default in example and update changes

Author: jpsmith5

docs/changelog.md

@@ -1,6 +1,19 @@
 # Change log
 All notable changes to this project will be documented in this file.
 
+## [0.9.4] -- 2020-08-31
+
+### Added
+ - Enable skipping of steps in project pipeline and summarizer
+
+### Changed
+ - Compress bed and peak coverage file output by default
+ - Fix `peakCounts` function reference peak set checks
+ - Fix `reduce` and `reducePeaks` to properly accept output file name/path
+ - Make input schema more explicit
+ - Catch and resolve issue with incomplete bed files in FRiF plotting
+ - Do not attempt to convert an empty peak file to a bigBed file
+
 ## [0.9.3] -- 2020-08-12
 
 ### Changed

examples/test_project/test_config.yaml

@@ -27,6 +27,6 @@ sample_modifiers:
         deduplicator: samblaster # Default. [options: picard]
         trimmer: skewer          # Default. [options: pyadapt, trimmomatic]
         peak_type: fixed         # Default. [options: variable]
-        extend: 250              # Default. For fixed-width peaks, extend this distance up- and down-stream.
+        extend: "250"            # Default. For fixed-width peaks, extend this distance up- and down-stream.
         frip_ref_peaks: None     # Default. Use an external reference set of peaks instead of the peaks called from this run
         blacklist: $GENOMES/hg38/blacklist/default/hg38_blacklist.bed.gz