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Copy file name to clipboardExpand all lines: src/l2label/compartments.py
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@@ -615,6 +615,14 @@ def predict_axon_mask(
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as the root node in the dendrite mask, by default True.
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threshold : float, optional
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The threshold for the smoothed label spreading to determine axon vertices, by default 0.
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threshold : float, optional
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The threshold for the smoothed label spreading to determine axon vertices, by default 0.
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root_is_soma : bool, optional
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If True, the root node is considered to be the soma and thus counts as non-axon, by default False
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is_axon_seg : np.ndarray, optional
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Precomputed segment-level axon probability ratio, by default None
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evaluate_isolated_dendrites : bool, optional
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If True, isolated dendrite components are flipped if they improve the segregation index and are net-positive in the log-odds along the path to root, by default False
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