Error in 'ant' build in ~/PaDEL-Descriptor/libPaDEL-Descriptor

[taceysa]

Hello, I am getting an error when trying to build the ~/PaDEL-Descriptor/libPaDEL-Descriptor piece of the application:

-do-compile:
    [javac] Compiling 108 source files to /opt/padel/PaDEL-Descriptor/libPaDEL-Descriptor/build/classes
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
    [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
    [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
    [javac] /opt/padel/PaDEL-Descriptor/libPaDEL-Descriptor/src/libpadeldescriptor/CDK_CrippenDescriptor.java:13: error: cannot find symbol
    [javac]         cdkDescriptor_ = new CrippenDescriptor();
    [javac]                              ^
    [javac]   symbol:   class CrippenDescriptor
    [javac]   location: class CDK_CrippenDescriptor
    [javac] /opt/padel/PaDEL-Descriptor/libPaDEL-Descriptor/src/libpadeldescriptor/CDK_MLFERDescriptor.java:13: error: cannot find symbol
    [javac]         cdkDescriptor_ = new MLFERDescriptor();
    [javac]                              ^
    [javac]   symbol:   class MLFERDescriptor
    [javac]   location: class CDK_MLFERDescriptor
    [javac] /opt/padel/PaDEL-Descriptor/libPaDEL-Descriptor/src/libpadeldescriptor/PaDELPDBReader.java:303: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
    [javac]                                                     if (readConnect.isSet() && atomNumberMap.put(new Integer(oAtom.getSerial()), oAtom) != null) {
    [javac]                                                                                                  ^
    [javac] /opt/padel/PaDEL-Descriptor/libPaDEL-Descriptor/src/libpadeldescriptor/PaDELPDBReader.java:319: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
    [javac]                                             if (atomNumberMap.put(new Integer(oAtom.getSerial()), oAtom) != null) {
    [javac]                                                                   ^
    [javac] /opt/padel/PaDEL-Descriptor/libPaDEL-Descriptor/src/libpadeldescriptor/PaDELPDBReader.java:540: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
    [javac]             IAtom firstAtom = (PDBAtom)atomNumberMap.get(new Integer(bondAtomNo));
    [javac]                                                          ^
    [javac] /opt/padel/PaDEL-Descriptor/libPaDEL-Descriptor/src/libpadeldescriptor/PaDELPDBReader.java:541: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
    [javac]             IAtom secondAtom = (PDBAtom)atomNumberMap.get(new Integer(bondedAtomNo));
    [javac]                                                           ^
    [javac] /opt/padel/PaDEL-Descriptor/libPaDEL-Descriptor/src/libpadeldescriptor/libPaDELDescriptorWorker.java:129: error: cannot find symbol
    [javac]                     cdk_descriptor.setMolecule((IAtomContainer)molecule.clone());
    [javac]                                   ^
    [javac]   symbol:   method setMolecule(IAtomContainer)
    [javac]   location: variable cdk_descriptor of type CDK_Descriptor
    [javac] /opt/padel/PaDEL-Descriptor/libPaDEL-Descriptor/src/libpadeldescriptor/libPaDELDescriptorWorker.java:157: error: cannot find symbol
    [javac]                     cdk_fingerprint_count.setMolecule((IAtomContainer)molecule.clone());
    [javac]                                          ^
    [javac]   symbol:   method setMolecule(IAtomContainer)
    [javac]   location: variable cdk_fingerprint_count of type CDK_FingerprintCount
    [javac] /opt/padel/PaDEL-Descriptor/libPaDEL-Descriptor/src/libpadeldescriptor/libPaDELDescriptorWorker.java:175: error: cannot find symbol
    [javac]                     cdk_descriptor.setMolecule((IAtomContainer)molecule.clone());
    [javac]                                   ^
    [javac]   symbol:   method setMolecule(IAtomContainer)
    [javac]   location: variable cdk_descriptor of type CDK_Descriptor
    [javac] /opt/padel/PaDEL-Descriptor/libPaDEL-Descriptor/src/libpadeldescriptor/libPaDELDescriptorWorker.java:201: error: cannot find symbol
    [javac]                     cdk_fingerprint_count.setMolecule((IAtomContainer)molecule.clone());
    [javac]                                          ^
    [javac]   symbol:   method setMolecule(IAtomContainer)
    [javac]   location: variable cdk_fingerprint_count of type CDK_FingerprintCount
    [javac] Note: Some input files use unchecked or unsafe operations.
    [javac] Note: Recompile with -Xlint:unchecked for details.
    [javac] 6 errors
    [javac] 8 warnings

BUILD FAILED

I just pulled the git repo and did not modify any of the scripts/build files.

Thanks!
Sean