build: update cool-seq-tool + pin gene-normalizer (#596)

* cool-seq-tool version bump: `mane_genes` extension will now include
`status`
* pin gene-normalizer

Author: korikuzma

pyproject.toml

@@ -29,9 +29,9 @@ dependencies = [
     "uvicorn",
     "pydantic ==2.*",
     "ga4gh.vrs[extras] ==2.0.0a13",
-    "gene-normalizer >=0.7.0",
+    "gene-normalizer ~=0.7.0",
     "boto3",
-    "cool-seq-tool ~=0.9.1",
+    "cool-seq-tool ~=0.12.0",
     "bioutils"
 ]
 dynamic = ["version"]

tests/conftest.py

@@ -620,6 +620,7 @@ def _mane_gene_ext_checks(actual_vo: dict) -> None:
     for mane_gene in mane_genes_ext["value"]:
         assert mane_gene["ncbi_gene_id"]
         assert mane_gene["symbol"]
+        assert mane_gene["status"]
 
 
 def assertion_checks(